RnoINT0168228 @ rn6
Intron Retention
Gene
ENSRNOG00000025554 | Zfp445
Description
zinc finger protein 445 [Source:RGD Symbol;Acc:1559144]
Coordinates
chr8:131892480-131893013:-
Coord C1 exon
chr8:131892866-131893013
Coord A exon
chr8:131892539-131892865
Coord C2 exon
chr8:131892480-131892538
Length
327 bp
Sequences
Splice sites
5' ss Seq
GTGGTACTC
5' ss Score
1.51
3' ss Seq
ATGACTCTTTTTTCCTTCAGATT
3' ss Score
11.03
Exon sequences
Seq C1 exon
GACTCATGCCTTACTCAGAACCCAGATGTGCATTGGATAGGCACTGGACCTCTGCAAGCTGCACAGATATGGTCCCCTGCGTCACATGTGGGGAAGAGCTCTGCTCTAGAAGACTACTTGGAGACTCCACATGGAATAGGACGAGGTG
Seq A exon
GTACTCACTCGTTGCCTAGACACTAACTTAATACCGTACCCCATACCTCTTGTGTTTCCTATACTGTTGTCTTGTTATCAGCTATTCTCTCACAAGAATCTTTCGTCACCTAGTTCTGGGTTCTCTTGAATGCTTCTGTGATTCATTTCTGGTTGGTTTCTTCATTCTACTCTCCCTTTCCTAGTCCCCAACAGACACTGAGGATGTTCGTGCCTCTTGAATAGCAGTCTGCTTGCCTGTAGGTCCTGGAATCCCCTAGAAGTGAGGAGTGTAAGCTTCTTGGGTGTCCAGAGCTGGACAACTCTTCATGACTCTTTTTTCCTTCAG
Seq C2 exon
ATTCTCCTGCTGTCTCGATGCCTGACTATTTCCAGATAGAAGAGAGCATAGAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025554:ENSRNOT00000034690:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATGCCTTACTCAGAACCC
R:
CTGGTGTTCTATGCTCTCTTCT
Band lengths:
206-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]