MmuINT0179259 @ mm10
Intron Retention
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122857103-122857638:-
Coord C1 exon
chr9:122857470-122857638
Coord A exon
chr9:122857162-122857469
Coord C2 exon
chr9:122857103-122857161
Length
308 bp
Sequences
Splice sites
5' ss Seq
CTGGTGACT
5' ss Score
3.06
3' ss Seq
ATGGCTCATTTTTCCTTCAGATT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GATCCATGTCTTACTCAGAATCCAGATGTGCATTGGATAGGCACTAGTGCTCTGCAGCCCGCACAGATATGGTCCCCTGCATCACATCTCAAGAACAGTTCTGCTCTAGAGGACCACTTGGAGACTTCACATGGAATAGGAATTTGTGACGTCCTGGCTGAACAAACTG
Seq A exon
GTGACTCACTAACTTTATGTCATATCTCTTGTGTTTCCTATACTGTTGTCTTGTTATCATCTGTTCTCTCACAAGAATCTTTTGGTACCTAGCTCTGGGTTCTCTTGAACGCTTCTGTGATTCATGTCTGGTTGGCTTCTTCCATTCCACTCTCCCTTTTCTGGTCCCTAGCAGACACTGAGGATGTCTGTGTATCTTGAATGGCAGTCTGCTTGCTTGTAGGTCCAAGGATCCTCTAGGAGTGAGGAGAGTGGGCTTCTGGGGTGTCCAGAGCTGGACCACTCTCTTATGGCTCATTTTTCCTTCAG
Seq C2 exon
ATTCTCCTGCTGTCTCGGTGCCTGACTATTTCCAGTTAGAAGAGGGCATAGAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036:ENSMUST00000216063:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTACTCAGAATCCAGATGTGC
R:
CTGGTATTCTATGCCCTCTTCTAACT
Band lengths:
222-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types