MmuINT0179258 @ mm9
Intron Retention
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122766588-122771377:-
Coord C1 exon
chr9:122770827-122771377
Coord A exon
chr9:122766757-122770826
Coord C2 exon
chr9:122766588-122766756
Length
4070 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TAACATTTTCTTCTTGCCAGGAT
3' ss Score
8.16
Exon sequences
Seq C1 exon
TGACTTCTGATGACCTAGCAAATAATGCCACACACTGCAATACTGTGAAGACACTCGCAAGGATACAGCAGTGATTTAGTGAAAGCAACAGATTTCTTTTGTGTTCATCTGTGTGACCCTGGATAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGGTAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGGCCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTGAGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGTTGTTGGTCTTGGAGCAATTCCTGAGCATCTTGCCTGGAGAGCTCCGGACATGGGTCCAACTCCATTGCCCTGAGAGTGGTGCAGAGGTTGTGGCCCTGCTGGAAGAGCTGCAGAGGGATCTTGATGGAACCCCACTGAAG
Seq A exon
GTAGGTGGTACACAGTAAGTTCTGCCTGCCTTTTTGTAAATGAAATGGTTTTCTGAACTGTGAGCTTGAGAAATGTAGGGGAGCTTCCCCTTGTTAATTCTCTTGATACCTGAGTATCTGAGAACTAGACTGTGATCATGGACCCTTTCGCAAAGTGTTCCTTCCATTTTACAGATGAAGATCACTTTAAAGTAGGATCAGCAGGTATTGATACATCATAGAATTACTTTTTGGATATGTGTTTATATCATAGAAGGTCCATCTCCACATAAGATCTGCAGGGAACTGAAGGGAGTCAGGAATCGTGATATCTGAATGGAAGAATACAAAAGAACAGTCTGCATGAACCATGTTTCCTTTTCTTAAGTTTTTTGAGGATATAGGAGTGGGAGTGGGCACAAGGGTTTGGGGCATCTCTGGGCTGAAAGTTGGAAGGCCTCAACTTTAAGCTTTGTCCAACAGTCTTACTGTTCTTAGACATATTATTGTGGGGCTCCCACCAGTAAAGACCACTCAGATAGTCTGTGAGCCAATTGAAAATCTTTATTTTTGCTGGCTGGTGACTACATATGGGTATTTGAAGCACTAAGTGTACTCCTAGCCTTTCTTGGGGTTTATATTTAAGCAAGACAACCAAATCCTGGCTGGAAAAATCCCAAGGTTTCCTTTTTGCAGCTGTAAACTAAGTAGATAGTTATGAAAGCCAAATTACCCAACTAGCAAAATTGAGGAAGTTAGGCTAATTTTTGCAAAGATCCTGTATTGTTGCTATTCTAGTGCTGTGAAGAAATGCAAATGACCATGCAGCTTGTGACTATGGCAGCTTTTATAAAGAAAAGTATTTAACTGGGGCTTGGTTATACTTTCAGAGGTTTAGTCCATTATCATTTATGGTGGGTATCTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGTAACTCTTATAAAAAGCAACATTTAATTGAGGCTGACTTACAGGTTCATAGGTTCAGTCCATTATCATTAAGGTGGTGAAAGACCTCCGAAGAAGAGAGACCCTCACTTAAGTCTCAGATGACGCAATTCCCCAAGAACTCACAAGAGACTGTCCTTGCTGCAATCACACGAGGTTTATTGACAGGAACCAGCATGCCGGGGCTGAGACTTGTATCCCACACTGGGGTAGAGGAGTTTGACCCTGAGTAGCTGGGAGAAGGGGTATTTAAAGGAAGAAACCACAACCCAAGGGGGTATGGAGGGCGTCATTGGAAAATACCATAAATACCAGTGAAAAATCACAAGGGGAAACTCCCTGTGAAAGACCAGGAAAAATTCAGACCCCCTAGCACCAAGAATGTAGGTTAGCCGGTTCAGTGACCCTGTTCCAGTAACTGGCCAGCCACAAAAGTTAGATTAAAATCTTGAGAACAATCTTGAGAAGCAGGGAGTTTCTCCTTGTGATTTTAGTACCCCCTTGTGATTTTTCACTGGTATATTTTGGCATTTTCCAATAACACCCTCCTTACTCCCTTGGGTTGTGTTTTTTTCCTTTAAATACCCCCTTTCGCAGCTTCTCGGCATGGTGTACGACTGTGGGCCCCAGAGCAAGCCTGGAATAAAAAGTCCTCTTGTGGTTTGCATCAAGGTTGTTTCTTGTGAGTGATTTGGGGTGTCGCCTCTCCTGAGTCAGAACCTGGGGGAGTCCTCCTTTGTGGGTCTTTCACCTGTTTCTCAAGATTGTTCTCAAGATTTTAATCTAACTTTTGTGGTCAGCCAGTTCCTAGAACAGAGTCACTGAACTGACTAACCTGCATTCTTGGCTCTACTCTGTTTGCTAGGGGATCTGGATTTTTCCTGGTCTTTCAGTGGGAACATGGCAGCATCTAGGCAGCATGGTACAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAAGCTGCTAGCAGAATACTGGCTTCCAGGCGGCTAGGATTAGGGTCTTAAAGCCCACACCCACAGTGACACACCTACTCCAACAGGGCCACACCCTCTAATAGTGCCACTTCCTGAGCAGAGCATATATAAACCATAATAATGGGGAATATAGTAGCCTGTAGGCAAGTACTGGAGCAATAGATGAGAACTACATCTTGATTCATGGGCAGAGAGAGACAGACAGACTGAGACTGACTGGGCTGGATGTGGGCTTTTGAAACCTCAAAGTCCACCCCCATAAACACCTTCAAAGAAGGCCACACCTCCTAATCCTTTTACTCCTTTCAAATAGTGCTTCTCCCTAGGGAGTCTTCCTGGAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTACTGGCCCTTTGCTCAGAGAGAGACATTTTACCTGAGGTAACAAAATGGAATCCATATAATTAACCTTTCAGGACGTCAGTTTATTGAGAAAGAAATGCAAAAATGGTATAATTATGAGGATTTGTTCAGTAACCATTTGAATGCTTTATCATGTGTCTGATTCCAACTCCTAGTACAGAGAAGCAGAGCTGTGTACCAGCCTGACAGTAAAGTGGTGCTACTGAAAGACCCCCCGTGGGAAGAACCCCACTCGTCTCGGGATGGCGCACACCCAAGGAAACACGAAAGACTGTCTTGATGCAAACACACGAGGCAGTTTAGTAACGGAGCTCCAGGCCGACATGTGTCTCACACAGGAGACAAAGGAATCGACCCTGAGGCTCAAAAGTTAGGGGTTTATATAGGAAAAAAGTCGGGGGATAGGGGAAATTGGTGAAGTTACACACAATTGGGGAGGGTGCTTATCTATGTCGGCAGAGTATCTGGTAAAACTCAAACCATATCAGAAGGAGACCAGACCAGGTGGCCCATTACTCAACTGGGCTTGTCTAGAGATTGTCCTTGCATGCCTCTCTTATCTTTATGGCCAGTCAGTTCCTGGAATGACTTAACCTTTGTGCCTGTCTGGGGCCTTGAATTGGGTTTTCTTTCTTTCACTACCTTCCATTGTTACATCCTTACCTCCTGCGTTCTGATCCTTTGCCTTTCCAGGTTTTTGTTTTGTTTTGAATGTATAGCCCTGGTCTTCTGAGTGCTGGGACTAAAGGTTTGTGCCACCACATCTGGCAACTTTTGTGTTTTTTCAAAAAGCATTTGTCATCTTTTTTAGGTTTTAAAATTTTATTTATATAAAAACATGAGCCTATATATGCATAATTTATGCATTGAAAATTACTAATATTTCTGAAGTTTATCCTTCAAATTTATTACAAAAATTAGATTAAGATTTGATAATAGTCTATGGTAAATGGTGATAAATCAACATAAGTAATGCTTATTTTAAAATGTGCCTTTTTAAAAATCTAAAAGTACATTTATCATTTTTATCAAAACAGATGTGCATAGGGATGTGATAGTAATTTATGAAATGAAATATAATAATTATGAAATTGTATGTTTAGTGGTCTCAATATAAGGCTTGTTCACATTAATTTAGAAAAATTATCAGCCACTGTGCCAGGAAGAGTCCTCTAAGTTCATTACCTGAAGCCTTCTGCACTCATTTCTACATTAAGGAAGCCGTGACTGAGAGAGCTGTTTGAAGTCCAATGGCAAAGCCCTCCTTTCTGTTCTCTGCTTGAATGAGCGAGCATAGGAGGAGAGGTTTTCTTTGTGGTTTGATTCCTGGTTGACCCTTAAAATGAACATTGTCTTTGTAGTGGTGATACTACTTTGTGAGGTTCTCTGAGGTCACTGTACATTTCAGTATCCTTGTCTGGATCTCTGCTGAGAACCAGTGCTCGTTTTGCTCCATTTCTCATCTTTAGACCTGGAGTCAAGTAGCACCTGGTGGAGAAGTTTCATTGTGGCACGTGAGGATTGCTATTATTGACTTGACCAGTGCGTCCTTCGTTACCTGGTGCAGGGAGGCCGAGGGGTGAAGTTTCTCTATCACCTTTTTTTCTGGGTCCCTTCTGCCAAGAAGTGATTAAAAGGCCTGGTGGCCTAAACCTTTACAGATTGGCCCATGGGAGTGTTCTCTGAATTTGCTTTCTGATTCCTACAGGAATGTTCTCATAACATTTTCTTCTTGCCAG
Seq C2 exon
GATCCATGTCTTACTCAGAATCCAGATGTGCATTGGATAGGCACTAGTGCTCTGCAGCCCGCACAGATATGGTCCCCTGCATCACATCTCAAGAACAGTTCTGCTCTAGAGGACCACTTGGAGACTTCACATGGAATAGGAATTTGTGACGTCCTGGCTGAACAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-Zfp445:NM_173364:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=67.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: