HsaINT0187302 @ hg19
Intron Retention
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:13111]
Coordinates
chr19:44416776-44423114:-
Coord C1 exon
chr19:44423022-44423114
Coord A exon
chr19:44419353-44423021
Coord C2 exon
chr19:44416776-44419352
Length
3669 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATTTTCTTTATCCTTTTAGGAG
3' ss Score
9.82
Exon sequences
Seq C1 exon
GGCATCAGTCCACACCAGATGGCCTACCACAGTTAGAGAGAGAAGAAAAGCTGTGGATGATGAAGATGGCAACCCAGAGAGATAACTCCTCAG
Seq A exon
GTGAGGAGGGGCTGGGGCTGCTGGACATTTTTCTGTTAGCCTTGGAGATATTCCAAGGTTGGCAAACAAAAATGTGTGACGAAGGCATAGTCTAGAACAGTTTTTTTCCCCCTGATGAATATCTAATCTAATTCTAATTTATTGGGTGCTTTTGGATATATGAAGATCTGTATTCATTAACCCACTTAGTTTGCTCAGGATGCTAAAACAAAATACTACCGACTGGGGGAATTATAAACAACGGAATTTTATTTCTGACATTTCTGGGGGCTGGGAAGTCCATGTTCAAAGCACCAGCAGATTCAGTGTCTGCTGAGGGCCCACTTCCTGATCCAATGACAGCACCTTCTTTGCTGCGTCCTTACAGGGAAGGGGCAAGAAATCTCTCTCAGGCCTCTTTTATAAGGGCACTAATCCTATTCATGAAAGATCTGCCCTCATGACATAATCACCTTCCTAATGCCTTAGGAGTTAGGATTTCAGCATACAAATGGCAAGGGCACACACATTGAGACCATAACACTCACATCTAATGAAAGCTTAGCTTTAGTTGTAATCAAATTGAGTATCATTTCCCCCTTGTGGCTTTCCTGTAGCTGTTAATAGTGAATCTTGCTCACTTGGTGAAGAACTACTTTTTAGAATAAAGGTTCTCATAGCCACGTTTTAGGCAGGTCCCCAAAAACACTTTACACAAGGAAAAAACAATGTTTAGAGAATAGCTTTTAAGTCTTTCCCTTTAAAAATTTTCTTTGTGGCAACCATCCACCTCTTCCAAAGAGAGTTACAGAAAAGAATATTACTTATCATTTTAGTAGTCCCTATTCAAATATGGTATGTATGGCAATGCCTTTATTTTCTACAAAATTAGCCACTAAGCAAATAAATGTTATAGAAGATAGCCATTAAATAAACATATACTAAAGAAGGTAGATTTTAGTTTTCTCTGCATTGTAATAAGGGCCTAACATATCATTTTCAATTAGAAACATTATAACCTGGGCAAAATAGGGAAATTGCCCTCCTCAAATTGACACATTCTCAGGAAGACCAAAAAAAGTCACATTTAAAAGTGAAAACTTGCAGCCAGTCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGGGTGGATCACCTGAGACCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGAGCATGGTGGCGCATACCTGTAACCCCAACTACTTGGGGGGCTGAGGTAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCTACAGCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAATAAATAAAAATAAAAGTGAAAACTTGCAAAGTATATACAGACATGACAAACTATGTAGGCTTCAACTTAAAGGAAACACATTTATCTGTTTCCCAAGTTTCCATTATTACAATGTAACTTTCTATTTGAACAATTTGTTTGATTAAGAAATTAATACCTTTCTTAATCATTTAGACTGGGAGGTTTCAAACTTTTGAGTATGAGTTACAATAAGAAATACATTTTATATCATAAATACAAACATTCACATATGGGTAGGTGTGTGTGTGTGGCCTTAAACAAGAATTTATGCGGAGAAATACATTTCTTGCTTACAAAACACGTCTAATATTTTTCTTTTCTGTTAATGCTTGTCACAAGCAACTGAATTTATTTCCAACTCACTAATAGTCCTAGCCTTCAGTTTGAAAAACAATGGTGTGATCTATATAGAAAAATATATTTACATCCATCCATTTTTATAGTCTGCTTTCAGAGAAAACATTATTCCCGAGGCTCTAAATATTGACTCCTACTTGAAAAAGGAAAAATCAGAGAACAAAAATTTTAGAAGCAATCAGTCCCTAGATCCCCTGGCCACTTTTCTGCCTTATGATTTTTTTTTTTCCTAAGTAATTCTTACCATGATTTTGTGATCAGCATGATTTTCTTATCAGCACCATCCACTTAGCCCTGAATCTGGTGAAACCTTTAAACTTCCCAGAAGAATCGCTCTTTCCAGTCCCTTTCCCATTATGCATCGTTTACTTGAAAAAGTTCTTTCACTTTTGTAATTTGGCTCAAAGTCTCCCAGAGAAGACAAGTGGGAATTCTTTTATTCAACACATCTATTGAACACTGTGTTGAGTCAGGCAGAGCTCTTGGGTGATGATAAAGTGGTGAATGATATAAAATGCTCGTTCTCATGGATGGCAACATCCATTCAACAGAGACATAAAAAATAATAAGGGACATATATAGTTTGTCAGAGGGTAATATGTGCTTTGTCAAAACAAAACAGGTGAATGGAAATTGCCAGGGGTGTAATGTAGATGGGGAGAATTTACTATCTGATATTGAGTGATAAAGAGGCATCACTGGGCCAGGCGTGGGGGCTCACAGCTATAATCCTAACACTTTGAGAGACTGAGGCAGGTGGATAGCTTGAGCTCAGGAGCTTGAGACCAGCCTAGGCAAGATGGTGAAACCCCATCTCTACAAAAAAGTACAAAAATTAGCCAGGTGTGATGGTGTGCTTCTGTAGTCCCAGCAGCTTGGGGGGATAAGGCAGGAGAATCACTTGAGTCAGGAGGTTGAGGCTGCAGCAAGCCATGTTTGTGCCACTGCATTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAACAAAAAGAAGGCCAGGTGCCGGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATTGAGACCAGCCTGACCGACATGGTGAAACCCCCCTGGTGGTTATGGAAACTTTAATTGCTATCAGGTTTTAGAATAATGTGTGTTATTACCATAAACCTCTTCTCCCAGGTGTTCTCATGGAGGCTATTTCCTAGCAAGAGGTAAAGGACCACTATCTGTTTACACTCGAACTTTAGGTATGTAGGTCAGTGATCCCCAATCTTGGCACCAGGGACTGGTTTGTTGGAAGATGGTTTTTCCACAGACTGGGGTCGGGGGGATGGTTTTGAAATGAAACTGTTCTACCTCAGATCATCAGACCTCAGTTAGATTCTCATAAGATTAGATTCTCACGCAACCTAGATCCCTCGCACGCGCAGTTCACGATAGGATTCGCACTCCTATAAGAATCTAATGTCACCATTGATGTGACAGGAGGCAGAGCTCAGGCAGTAATGCCCACTGGCCTCCCGCTCACCTCCTGCTGTGTGGCCCAGATCCTAACAGGCCACGGACTGGTACTGATCCACGGCCCAGGGGTTGGGGGCCCTGACTTAGGTGATAAGGTATTTTCTGAAAAATGTGTCTTTCTAACTAGCACAGTGCCTCAACATCTCCCAACCTTGGAATAAACTTCCAATGAAATAATCCCAGGCAAAGGTTTTTGAAAATTTATGTGTAGGAGTTTTACTAGACATTTTGAACAGGGCCACTTTGTTCAGATGTCTATGCAGTAGGCAATGGAACCTTCTCCTGGTTCAATGAAGCCTTAGGCTATGGGCCCGAGTTTATAAACTTGACATCTTGGAACAAAACATTATTCACATGCCCCATCTCCACATTTTCTTTATCCTTTTAG
Seq C2 exon
GAGCCAAGAATCTAAAAGAGATGGAGACTCTTCAAGAAGTAGGATTAAGGTACCTGCCTCATGAAGAGCTTTTCTGCTCCCAGATCTGGCAACAGATTACAAGAGAGTTAATCAAGTATCAAGATTCTGTGGTAAATATTCAAAGAACAGGCTGCCAGTTGGAAAAACGAGATGATTTGCACTATAAAGATGAGGGATTCAGTAATCAGAGTTCCCATCTTCAAGTTCACAGAGTCCACACTGGTGAAAAACCCTACAAAGGAGAACATTGTGTGAAAAGTTTCAGCTGGAGCTCTCATCTTCAAATTAACCAAAGGGCTCATGCAGGAGAGAAGCCCTACAAATGTGAAAAATGTGATAATGCCTTCCGTCGGTTTTCAAGTCTTCAAGCCCATCAGAGAGTCCACAGTAGAGCAAAATCATACACAAATGATGCAAGTTACAGGAGTTTTAGTCAGAGGTCACATCTTCCCCATCATCAGAGAGTTCCCACTGGAGAGAATCCATACAAATATGAAGAGTGTGGGAGGAATGTTGGGAAAAGCTCACATTGTCAAGCTCCTCTGATAGTTCATACGGGAGAGAAACCCTATAAATGTGAGGAGTGTGGGGTGGGCTTCAGTCAGAGATCATATCTTCAAGTTCATCTGAAAGTTCACACTGGAAAGAAACCATATAAGTGTGAAGAGTGTGGGAAGAGCTTCAGTTGGCGTTCACGACTGCAGGCTCATGAGCGAATCCACACTGGCGAGAAACCATACAAATGCAATGCATGTGGCAAGAGCTTTAGTTACAGCTCACACCTTAATATTCATTGTAGAATCCACACAGGAGAGAAACCCTATAAGTGTGAGGAGTGTGGGAAAGGTTTCAGTGTGGGTTCACACCTTCAGGCCCATCAGATAAGCCACACTGGAGAGAAGCCATACAAATGTGAGGAGTGTGGGAAAGGCTTCTGCCGGGCCTCAAATCTGCTGGACCATCAAAGAGGCCATACTGGAGAGAAACCGTATCAGTGTGATGCATGTGGTAAGGGCTTCAGTCGTAGCTCAGATTTTAACATTCATTTTAGAGTCCATACAGGGGAAAAACCCTATAAATGTGAGGAGTGTGGCAAGGGCTTCAGCCAGGCCTCAAATCTTCTGGCCCATCAAAGAGGCCACACTGGAGAGAAACCCTACAAATGTGGTACATGTGGGAAGGGCTTCAGTCGGAGCTCAGATCTTAATGTACACTGTAGAATCCACACAGGAGAGAAACCCTATAAATGCGAGAGGTGTGGTAAGGCCTTCAGTCAGTTCTCCAGCCTTCAGGTGCATCAGAGAGTTCACACTGGAGAGAAACCATATCAGTGTGCAGAGTGTGGGAAGGGCTTCAGTGTAGGTTCACAGCTTCAAGCCCATCAGAGGTGCCACACTGGAGAGAAACCCTATCAATGTGAGGAGTGTGGGAAGGGCTTCTGTCGGGCCTCCAATTTTCTGGCACATCGTGGAGTCCACACAGGAGAAAAACCATACCGATGTGATGTGTGTGGTAAGCGCTTCAGACAGAGATCCTACCTTCAAGCCCACCAGAGGGTCCACACAGGAGAGAGACCATACAAATGTGAGGAATGTGGGAAAGTCTTCAGCTGGAGCTCATACCTTCAAGCCCATCAAAGAGTTCACACCGGAGAAAAACCATACAAATGTGAGGAGTGTGGGAAGGGCTTCAGTTGGAGCTCAAGTCTTATCATTCATCAGCGAGTCCATGCTGATGATGAGGGTGACAAGGACTTTCCTTCATCAGAGGATTCACACAGGAAAACTCGATAAAATATGTTTTACTATCTCAGATGGGTGCTGAAATATTTTAATAATCAGAGCTATCATAGACAAAACATTTGTTTTATAGAGTCAGTAGTTCAGCCAAGTGATTGGGAGACCACACAGCAGAGAAGCCTCACAAGAGTGGAGACATATGGACTGCATTCAGAACATTGACCATTAGCTGATACATGCAGACAAGAGGATCAGGAAGGATGAGTCTGATCTGGAGTAAATCAGAAGTACTAAGATAGAAATGCTGAATTCTGTTCCACTAGAATATAAGATCCAAGAGGGCAGGGACTTTGTTGACTGCCAAATCTACTCTGCCTTTTCAGTGCCTAATACGTTGTAATTTTTCAGTAGTATTTGAAATTACTGTCATATTTGAAATTCAGTAATATTTGACATTTTTATTTATCTCTAGAAGTTTCTCTAAAATTGTACTCAGAAGAATTCTGCAAGGCTTGGAGGATATATAAGTTAGTCATATGGCCTGATTTTCCCATTTTTGCAGATCTCGTGGACAAGTGTTTATCAAACTGAAGGTTGCAGCTTGTTAGTGGGTTCAGAAATCAGTTTCTGGCTAGCAACTAGAAGTTTTGTATGTTAACAGTACTTTATTGAGGTGTAATCTGCATGCAGTAACATGCACAAGTCTCAAGTTCATGGCTTTCTGAATTTTGACAAATGTAATCATCACCAAGATCAATGTATACAATATGTCTATTAAACCAAAAAGTTTTCTTGTGCCCATTTCCAGTCAATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-ZNF45:NM_003425:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=NA C2=0.124
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF0013017=C1_1=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)