HsaINT0187302 @ hg38
Intron Retention
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43912629-43918962:-
Coord C1 exon
chr19:43918870-43918962
Coord A exon
chr19:43915201-43918869
Coord C2 exon
chr19:43912629-43915200
Length
3669 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATTTTCTTTATCCTTTTAGGAG
3' ss Score
9.82
Exon sequences
Seq C1 exon
GGCATCAGTCCACACCAGATGGCCTACCACAGTTAGAGAGAGAAGAAAAGCTGTGGATGATGAAGATGGCAACCCAGAGAGATAACTCCTCAG
Seq A exon
GTGAGGAGGGGCTGGGGCTGCTGGACATTTTTCTGTTAGCCTTGGAGATATTCCAAGGTTGGCAAACAAAAATGTGTGACGAAGGCATAGTCTAGAACAGTTTTTTTCCCCCTGATGAATATCTAATCTAATTCTAATTTATTGGGTGCTTTTGGATATATGAAGATCTGTATTCATTAACCCACTTAGTTTGCTCAGGATGCTAAAACAAAATACTACCGACTGGGGGAATTATAAACAACGGAATTTTATTTCTGACATTTCTGGGGGCTGGGAAGTCCATGTTCAAAGCACCAGCAGATTCAGTGTCTGCTGAGGGCCCACTTCCTGATCCAATGACAGCACCTTCTTTGCTGCGTCCTTACAGGGAAGGGGCAAGAAATCTCTCTCAGGCCTCTTTTATAAGGGCACTAATCCTATTCATGAAAGATCTGCCCTCATGACATAATCACCTTCCTAATGCCTTAGGAGTTAGGATTTCAGCATACAAATGGCAAGGGCACACACATTGAGACCATAACACTCACATCTAATGAAAGCTTAGCTTTAGTTGTAATCAAATTGAGTATCATTTCCCCCTTGTGGCTTTCCTGTAGCTGTTAATAGTGAATCTTGCTCACTTGGTGAAGAACTACTTTTTAGAATAAAGGTTCTCATAGCCACGTTTTAGGCAGGTCCCCAAAAACACTTTACACAAGGAAAAAACAATGTTTAGAGAATAGCTTTTAAGTCTTTCCCTTTAAAAATTTTCTTTGTGGCAACCATCCACCTCTTCCAAAGAGAGTTACAGAAAAGAATATTACTTATCATTTTAGTAGTCCCTATTCAAATATGGTATGTATGGCAATGCCTTTATTTTCTACAAAATTAGCCACTAAGCAAATAAATGTTATAGAAGATAGCCATTAAATAAACATATACTAAAGAAGGTAGATTTTAGTTTTCTCTGCATTGTAATAAGGGCCTAACATATCATTTTCAATTAGAAACATTATAACCTGGGCAAAATAGGGAAATTGCCCTCCTCAAATTGACACATTCTCAGGAAGACCAAAAAAAGTCACATTTAAAAGTGAAAACTTGCAGCCAGTCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGGGTGGATCACCTGAGACCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGAGCATGGTGGCGCATACCTGTAACCCCAACTACTTGGGGGGCTGAGGTAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCTACAGCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAATAAATAAAAATAAAAGTGAAAACTTGCAAAGTATATACAGACATGACAAACTATGTAGGCTTCAACTTAAAGGAAACACATTTATCTGTTTCCCAAGTTTCCATTATTACAATGTAACTTTCTATTTGAACAATTTGTTTGATTAAGAAATTAATACCTTTCTTAATCATTTAGACTGGGAGGTTTCAAACTTTTGAGTATGAGTTACAATAAGAAATACATTTTATATCATAAATACAAACATTCACATATGGGTAGGTGTGTGTGTGTGGCCTTAAACAAGAATTTATGCGGAGAAATACATTTCTTGCTTACAAAACACGTCTAATATTTTTCTTTTCTGTTAATGCTTGTCACAAGCAACTGAATTTATTTCCAACTCACTAATAGTCCTAGCCTTCAGTTTGAAAAACAATGGTGTGATCTATATAGAAAAATATATTTACATCCATCCATTTTTATAGTCTGCTTTCAGAGAAAACATTATTCCCGAGGCTCTAAATATTGACTCCTACTTGAAAAAGGAAAAATCAGAGAACAAAAATTTTAGAAGCAATCAGTCCCTAGATCCCCTGGCCACTTTTCTGCCTTATGATTTTTTTTTTTCCTAAGTAATTCTTACCATGATTTTGTGATCAGCATGATTTTCTTATCAGCACCATCCACTTAGCCCTGAATCTGGTGAAACCTTTAAACTTCCCAGAAGAATCGCTCTTTCCAGTCCCTTTCCCATTATGCATCGTTTACTTGAAAAAGTTCTTTCACTTTTGTAATTTGGCTCAAAGTCTCCCAGAGAAGACAAGTGGGAATTCTTTTATTCAACACATCTATTGAACACTGTGTTGAGTCAGGCAGAGCTCTTGGGTGATGATAAAGTGGTGAATGATATAAAATGCTCGTTCTCATGGATGGCAACATCCATTCAACAGAGACATAAAAAATAATAAGGGACATATATAGTTTGTCAGAGGGTAATATGTGCTTTGTCAAAACAAAACAGGTGAATGGAAATTGCCAGGGGTGTAATGTAGATGGGGAGAATTTACTATCTGATATTGAGTGATAAAGAGGCATCACTGGGCCAGGCGTGGGGGCTCACAGCTATAATCCTAACACTTTGAGAGACTGAGGCAGGTGGATAGCTTGAGCTCAGGAGCTTGAGACCAGCCTAGGCAAGATGGTGAAACCCCATCTCTACAAAAAAGTACAAAAATTAGCCAGGTGTGATGGTGTGCTTCTGTAGTCCCAGCAGCTTGGGGGGATAAGGCAGGAGAATCACTTGAGTCAGGAGGTTGAGGCTGCAGCAAGCCATGTTTGTGCCACTGCATTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAACAAAAAGAAGGCCAGGTGCCGGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATTGAGACCAGCCTGACCGACATGGTGAAACCCCCCTGGTGGTTATGGAAACTTTAATTGCTATCAGGTTTTAGAATAATGTGTGTTATTACCATAAACCTCTTCTCCCAGGTGTTCTCATGGAGGCTATTTCCTAGCAAGAGGTAAAGGACCACTATCTGTTTACACTCGAACTTTAGGTATGTAGGTCAGTGATCCCCAATCTTGGCACCAGGGACTGGTTTGTTGGAAGATGGTTTTTCCACAGACTGGGGTCGGGGGGATGGTTTTGAAATGAAACTGTTCTACCTCAGATCATCAGACCTCAGTTAGATTCTCATAAGATTAGATTCTCACGCAACCTAGATCCCTCGCACGCGCAGTTCACGATAGGATTCGCACTCCTATAAGAATCTAATGTCACCATTGATGTGACAGGAGGCAGAGCTCAGGCAGTAATGCCCACTGGCCTCCCGCTCACCTCCTGCTGTGTGGCCCAGATCCTAACAGGCCACGGACTGGTACTGATCCACGGCCCAGGGGTTGGGGGCCCTGACTTAGGTGATAAGGTATTTTCTGAAAAATGTGTCTTTCTAACTAGCACAGTGCCTCAACATCTCCCAACCTTGGAATAAACTTCCAATGAAATAATCCCAGGCAAAGGTTTTTGAAAATTTATGTGTAGGAGTTTTACTAGACATTTTGAACAGGGCCACTTTGTTCAGATGTCTATGCAGTAGGCAATGGAACCTTCTCCTGGTTCAATGAAGCCTTAGGCTATGGGCCCGAGTTTATAAACTTGACATCTTGGAACAAAACATTATTCACATGCCCCATCTCCACATTTTCTTTATCCTTTTAG
Seq C2 exon
GAGCCAAGAATCTAAAAGAGATGGAGACTCTTCAAGAAGTAGGATTAAGGTACCTGCCTCATGAAGAGCTTTTCTGCTCCCAGATCTGGCAACAGATTACAAGAGAGTTAATCAAGTATCAAGATTCTGTGGTAAATATTCAAAGAACAGGCTGCCAGTTGGAAAAACGAGATGATTTGCACTATAAAGATGAGGGATTCAGTAATCAGAGTTCCCATCTTCAAGTTCACAGAGTCCACACTGGTGAAAAACCCTACAAAGGAGAACATTGTGTGAAAAGTTTCAGCTGGAGCTCTCATCTTCAAATTAACCAAAGGGCTCATGCAGGAGAGAAGCCCTACAAATGTGAAAAATGTGATAATGCCTTCCGTCGGTTTTCAAGTCTTCAAGCCCATCAGAGAGTCCACAGTAGAGCAAAATCATACACAAATGATGCAAGTTACAGGAGTTTTAGTCAGAGGTCACATCTTCCCCATCATCAGAGAGTTCCCACTGGAGAGAATCCATACAAATATGAAGAGTGTGGGAGGAATGTTGGGAAAAGCTCACATTGTCAAGCTCCTCTGATAGTTCATACGGGAGAGAAACCCTATAAATGTGAGGAGTGTGGGGTGGGCTTCAGTCAGAGATCATATCTTCAAGTTCATCTGAAAGTTCACACTGGAAAGAAACCATATAAGTGTGAAGAGTGTGGGAAGAGCTTCAGTTGGCGTTCACGACTGCAGGCTCATGAGCGAATCCACACTGGCGAGAAACCATACAAATGCAATGCATGTGGCAAGAGCTTTAGTTACAGCTCACACCTTAATATTCATTGTAGAATCCACACAGGAGAGAAACCCTATAAGTGTGAGGAGTGTGGGAAAGGTTTCAGTGTGGGTTCACACCTTCAGGCCCATCAGATAAGCCACACTGGAGAGAAGCCATACAAATGTGAGGAGTGTGGGAAAGGCTTCTGCCGGGCCTCAAATCTGCTGGACCATCAAAGAGGCCATACTGGAGAGAAACCGTATCAGTGTGATGCATGTGGTAAGGGCTTCAGTCGTAGCTCAGATTTTAACATTCATTTTAGAGTCCATACAGGGGAAAAACCCTATAAATGTGAGGAGTGTGGCAAGGGCTTCAGCCAGGCCTCAAATCTTCTGGCCCATCAAAGAGGCCACACTGGAGAGAAACCCTACAAATGTGGTACATGTGGGAAGGGCTTCAGTCGGAGCTCAGATCTTAATGTACACTGTAGAATCCACACAGGAGAGAAACCCTATAAATGCGAGAGGTGTGGTAAGGCCTTCAGTCAGTTCTCCAGCCTTCAGGTGCATCAGAGAGTTCACACTGGAGAGAAACCATATCAGTGTGCAGAGTGTGGGAAGGGCTTCAGTGTAGGTTCACAGCTTCAAGCCCATCAGAGGTGCCACACTGGAGAGAAACCCTATCAATGTGAGGAGTGTGGGAAGGGCTTCTGTCGGGCCTCCAATTTTCTGGCACATCGTGGAGTCCACACAGGAGAAAAACCATACCGATGTGATGTGTGTGGTAAGCGCTTCAGACAGAGATCCTACCTTCAAGCCCACCAGAGGGTCCACACAGGAGAGAGACCATACAAATGTGAGGAATGTGGGAAAGTCTTCAGCTGGAGCTCATACCTTCAAGCCCATCAAAGAGTTCACACCGGAGAAAAACCATACAAATGTGAGGAGTGTGGGAAGGGCTTCAGTTGGAGCTCAAGTCTTATCATTCATCAGCGAGTCCATGCTGATGATGAGGGTGACAAGGACTTTCCTTCATCAGAGGATTCACACAGGAAAACTCGATAAAATATGTTTTACTATCTCAGATGGGTGCTGAAATATTTTAATAATCAGAGCTATCATAGACAAAACATTTGTTTTATAGAGTCAGTAGTTCAGCCAAGTGATTGGGAGACCACACAGCAGAGAAGCCTCACAAGAGTGGAGACATATGGACTGCATTCAGAACATTGACCATTAGCTGATACATGCAGACAAGAGGATCAGGAAGGATGAGTCTGATCTGGAGTAAATCAGAAGTACTAAGATAGAAATGCTGAATTCTGTTCCACTAGAATATAAGATCCAAGAGGGCAGGGACTTTGTTGACTGCCAAATCTACTCTGCCTTTTCAGTGCCTAATACGTTGTAATTTTTCAGTAGTATTTGAAATTACTGTCATATTTGAAATTCAGTAATATTTGACATTTTTATTTATCTCTAGAAGTTTCTCTAAAATTGTACTCAGAAGAATTCTGCAAGGCTTGGAGGATATATAAGTTAGTCATATGGCCTGATTTTCCCATTTTTGCAGATCTCGTGGACAAGTGTTTATCAAACTGAAGGTTGCAGCTTGTTAGTGGGTTCAGAAATCAGTTTCTGGCTAGCAACTAGAAGTTTTGTATGTTAACAGTACTTTATTGAGGTGTAATCTGCATGCAGTAACATGCACAAGTCTCAAGTTCATGGCTTTCTGAATTTTGACAAATGTAATCATCACCAAGATCAATGTATACAATATGTCTATTAAACCAAAAAGTTTTCTTGTGCCCATTTCCAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459:ENST00000269973:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains