RnoINT0081887 @ rn6
Intron Retention
Gene
ENSRNOG00000055608 | LOC102548695
Description
zinc finger protein 45-like [Source:RGD Symbol;Acc:7529325]
Coordinates
chr1:81159107-81162089:-
Coord C1 exon
chr1:81161994-81162089
Coord A exon
chr1:81161000-81161993
Coord C2 exon
chr1:81159107-81160999
Length
994 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AATTCTCTTTATGCTTTTAGGAG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GGCATCGGATCGGGACTCCAGATGGTTTGCTCAGGCTCAAGAGAGAAGACATGTTTTGGCTGTTGACAGTGGCTCGCTGGAGCAGTGGGTCTATGG
Seq A exon
GTGAGGACAGTGCAGCAGCTCGCCCGCCTTGCTTCTTAACCTGGGGATGGGTTTGGGGCTGGGGTGGGCCAGGGCTCTGGTCCGCCCCCACCGTCAGCATCCATCTCCACATGTACTGACTCCCATGACGCTTGGTCACATCATCACCGCTGGCCTGCCTAGGCCTGCCATCTTCCCAAGTGACGACATGGAGACATGTTAATTATGGAATCCTATGCAGTAGCGTACTCATTCCCACCTAGCTTGTGTAACTTAAATTAACCCACTTATGTGTATCTACACTGTGTTGCATGAATGATGCTACTTGGTAATGGATACCTTGATAGTGTGGTACAATTAACTTATTCTGTGTCTGGTTGGTGAGGCCTCCCACCTGACTCTTTCCCAGAATTCCCATCTCTGCCCAGAAGTCCCGCCTATCCTCTCCTGCCTAGCTATAGGCCATCAGATCTTTAATAAACCAATTGGAAGATGCCTTCAGTAGATGAGGAAGGACAGAGAACAGCTTCGCATGGTGCACAAAAAGATTTCACAACATATTATACTATTCCTTTACATCTGGATGGTTCCTTGTGGATATGTACACAGGCGCATGCATACGTGTGTGTGTGTGTGTGTGTGTGTGTATACGTGTGTGTATGTACTCAATAGATCAATATTTTCTTCTTTAGTTACTTTCCAACTTTAATGTTTAAAAAGTTATATTTATTTATGTGTATGGGGAGCACACATATTGCAGTGTTGCTCACTTGTGATAATTTGTAAAACTCTAAACTGGTCTCATTAATATAAGTATGGGAGCTTGCAGCACTGACCTTGGCTTCTGGGCGTGTCGGTGAGATGACAGGATACTTAGTGTTAAAGGAAGGGAGCCATTTGTTCTCTGGTTCAGTGAAATCTTCGGCTGTGGTCTTAACTGTATCACTCCAGCATCAGGCAACAGAGCATTCACACGCCCTGCCTGCCTCTCTCTGAATTCTCTTTATGCTTTTAG
Seq C2 exon
GAGACAAGAATCTAGAGGACATGGAGTTTCTCGAGGAGGTGGGACTGAGGCACCTGCCACATGAGGAGCTTTTCTGCTCACAGATCTGGCAGCGAATTACAAGGGAGTTAACCAAGGTTCGAGACTGCAGAGTACGTGTCGGAGAAAATGGCTCTCCGATGAAACGAGACAATCGTGAAGACGAGTACAGCAAACATTCCAGTCAAAATTCAGTCTTTCAGGTTCACCACAGGGAATGCCATGAAGAAGAGGCAAATGAGAGAGATTTTGGTTGCAGCCACCATCTTCGTACCAGTACAGGAGAAAAGTCCTACAAGTGTGAAAAATGTCACAACGCCTCCCATTGGTTCTCAAGCCTTCAGTCCCATCAGGGAGTGTGTGATAGACCCAGATGGAACAAGTCTGTGTCACAGTTTAAAATTTTCCGTCAGTGGCCACTGTTTCATTATCAACAGAGCATGCCCAATGGAGAAAACGCACAGGAATATGAGGCGTGTGGGAATGCCGGGAAAAACTCCTCTGGTCAGACAGCTCTGTTCGTCCACACCGCAGAGGAACCCTATTCATGTGAGGAGTGCGGGGCACGCTTCAGTCAGAGCTCATACCTTCAAGTCCACCAGAGAGTTCACACCGGAGAGAAACCGTATAAGTGCGAGGAGTGTGGGAAGGGCTTCGGCTGGTTATCACAACTTCATGCTCATCATCAAAGCCACACTGGAGAGAAACCCTATACGTGTGACGCGTGTGGCAAGGGCTTTAGTTACAGCTCACACCTTAACATTCACTGTAGAATCCACACGGGTGAAAAGCCCTATCAGTGTGAAGAGTGTGGGAAAGGCTTCAGCCAGGCCTCCAACCTCCTGGCCCATCAGCGCGGCCACACTGGCGAGAAGCCATACCAGTGCGATGCTTGTGGGAAGGGCTTCAGTCGTATCTCTGATTTTAACATTCACATTAGAGTCCACACGGGTGAGAAGCCTTATAAGTGTGAGGAGTGTGGGAAAGGCTTCAGCCAGGCCTCAAATCTTCTGGCCCATCAGAGAGGCCACACTGGAGAGAAACCCTACAAATGCAACACGTGTGGGAAGTCCTTCCGTAGGAGTTCAGACCTTAACGTTCATTGTAGAATCCACACAGGAGAGAAACCCTATAGATGTGAGAAATGTGACAAAGTCTTCAGCCAGTTCTCAAGTCTCCAAGTGCATCAGAGGGTCCACACAGGAGAGAAACCATATCAGTGCTCAGAGTGTGGGAAGGGCTTCAGTGTAGGTTCTCAACTTCAAGCCCACCAGAGGTGCCACACTGGAGAGAGACCCTATCAATGTGAGGAGTGTGGGAAGGGCTTCTGTCGGGCCTCCAACTTTCTAGCTCATCATGGGGTCCACACAGGAGAGAAACCATACCGATGTGACATGTGTGGGAAACACTTCCGGCAGAGGTCCTACCTCCAGGCCCACCATAGGGTCCACACGGGAGAGAAACAGTTCCGATGTGAGGAGTGCGGGAAGGGCTTCAGTTGGAGCTCATACCTCCAAGCCCACCAGAGAGTCCACATGGGAGAGAAACCATACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGCTGGAGCTCAAGTCTCCTGACACACCAGCGAGTGCATGCCGAGGACGAGGGGCAGAAGGACCTTTCTTCATCAGGGGGTTCGTACAGGAAATAGGCTCTACAAACTTAGGTTTTGACATTTCAAGAGGGCGCCGAAATATCTAATCTGAGCTGTTGCGGGGCATGGAAAAGTTAACATAGCTGGGCTTGTGTGTTAGAGCTGTACTGGGCTGCTACATGGTTTGGGGCACCAGAGTGAACTGGGAAGAATGGATCTGTGATCATTTCATCCAGAAACCCGACCCTTATCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055608:ENSRNOT00000088746:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGCTCAGGCTCAAGAG
R:
TGGTGGCTGCAACCAAAATCT
Band lengths:
357-1351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]