HsaINT0187342 @ hg19
Intron Retention
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:23154]
Coordinates
chr7:149466179-149467645:-
Coord C1 exon
chr7:149467529-149467645
Coord A exon
chr7:149466290-149467528
Coord C2 exon
chr7:149466179-149466289
Length
1239 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GGTATCCTATTCTCTGCCAGGGC
3' ss Score
6.77
Exon sequences
Seq C1 exon
GATTCTCTGTGGGACAGCCAGAGATGGCCCCCCAAAGTGAGCCCAGGGAAGGATCCCATAATGCCCAGGAGCAGATGTCCTCTTCTAGGGAAGAGAGAGCACTGGGGGTGTGCTCAG
Seq A exon
GTAGGTAACAGGAACCCTGGAAAGGCTCAGGGAGGAGTCCCCCTGCTTTCCTCCTGCCCTCCCTACCTCTCTCCCTTCTTCCCTCCCCCCTCCCTCCCTCCCTTCCTTCTTTCCTTCCTTCCTTCCATTCATCAAATATTTATTGAGCACCTATTATGTGTGGGATGCTATTCTAAACATTTGGAATACCTCAGTGACCAAATAGTCAAAGATCCCTACCTTCAAGAGCTTAATCCTAATGAGTGCAGAGAGTCAGCAAACAATAAATAAGGAAATTTCTAAACTATGTTCAAAGGTGATAAGAGCTCTGGGGGAGAGGATAATGTCCAGTGAAGCAGGTTGAAGGGGGCCGAGACAGCTGCAGGTGGGGGTGGGTGGGGCATGTTATAGGATTAAATAGGGTGAGGAGACTGGGTTTCTTTGGGAAGGTAAGATTTGTGCAGGATTTGAAGGAGCTTGGGGAAGCCGGGCATGGTGGCTTATGCCTGTATTCTCAGCCCTTTGGGAGGCCAAGGTGGAAGGATTGCTTGAGCCCCATTCGAGACCAGCCTAGGCAACATGGCAAGACCCTGTCTCCACAAAAAATTAAAAGTTAGCTGGATGTGGTGGCTCATGCCTGTGTTCCCAGCTACTTGGGAGGCTGGGGCAGGAGGATCCCTTGAAGCCCAGGCTGCAGTGAGGTATGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGAGGACCTTTCTCTAAAAAAAGAAAAATAAAAGAGGTGAAGGCGGCAGCTCAGCAGATTTGGGAAAAGTGCTTCAGGCAGGAGTACAGCCAGGACAGAGCACTAAGGCAGGAATGTGCCTGGCTTTTGACATCCTGATTCTCCCCAGTGATTTGCTTGGAACCAGGGTCCATCTGGGGGCTGGGAAGTCCCCAGCCCTTCTCCTAGGGGCATCAGGTCAGGGGACTTCCTTGCTTCCACTGTCTTACATACACATATTCCAGGAACTCTTCACAGTGGTGGCTCTTGTAACCTTGTAGTCCATCTCATTACATACCCTTAGCAGCCGCCCTGCTTGAAGGAGTCTGAGGCAGCCCCAGGGAAGCTGGGAACTCAGCCCCTTAATTCAGGTAGGATGTGGGAGGAACCCTGTGGGCCCTGCTGGAGCCAGGGTTTCAAATGCTCCTGCTTCCCAGCACCAGTGGGGCCCTTTGGCCATCTGTGATGTCTCCAGAGTCCTTGAGGTATCCTATTCTCTGCCAG
Seq C2 exon
GGCACGAGGCCCCTACACCGGAGGAAGGTGCCCACACAGAACAAGCCGAGGCTCCCTGCAGAGGCCAGGCGTGCTCAGCACAGAAGGCTCAGCCTGTGGGTACCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444-ZNF467:NM_207336:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCTGTGGGACAGCCAGA
R:
CAGGTACCCACAGGCTGAGC
Band lengths:
222-1461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)