RnoINT0168265 @ rn6
Intron Retention
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78073763-78074731:-
Coord C1 exon
chr4:78074618-78074731
Coord A exon
chr4:78073877-78074617
Coord C2 exon
chr4:78073763-78073876
Length
741 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GGCATCCTCTTCTCTTTTAGGGC
3' ss Score
11.05
Exon sequences
Seq C1 exon
GATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAG
Seq A exon
GTAAGTGGGTAGCTTGGAGGGTGGCTCTGGAAAGGATATTCCTCCTTCCACAAGCCATTGATTAAGCATCTACTCTGCTGGATGCTAGTCTGGACAATTAGAATGCCTTAGGCACTGAATAGACCTAGGTCCCTCCCTTCCTGGAACTTAATTTTAGAACGGGCAGCTGTCAGCCAACAAGAAGTGTAAGCATGATAAAAGCTGTAAGCCACCTTAGAAGAATAAAAGTGCTATAGGGGTGATATATCATAGTGAGAGGGGCCTGCGTGGCTGCTGGTGGGACGATGCAGGAATGCCTAAGGCAAGATCTAGCCTGGCTTCTTCCCATTCTTTTCCTCACATGTTTTGCCTCCCTTAGAACTGAGAAGTCTAACTGCTCAGGTCAAAGTTCTTCCCTTGGGGTTGAGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAAAAGAAAGCCAAAGTTCTTCCCTTCTTTCCTTCCACCTCCTTAAAAAAACACATAGTCCAGAAATTCCTCATAGTTGTGGTTCCTGTCCCCCCTTAGCACCTGCTTCTGCCACTGGGAATGTGCCTTTTCAGGTATGATGTAGGACAGAGATCTTTGGGGAGTTCAGACTTGCTTCCCTACCCCCTAGATGGGGTTTGCCTTCCACCTGTGATGTTTTTGGAGTCCTTGGGGCATCCTCTTCTCTTTTAG
Seq C2 exon
GGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707:ENSRNOT00000010377:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCAGTGGGACAGCCAGA
R:
GGGACAGAGCTTGCAGGC
Band lengths:
225-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]