MmuINT0179320 @ mm9
Intron Retention
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48391946-48392737:-
Coord C1 exon
chr6:48392624-48392737
Coord A exon
chr6:48392060-48392623
Coord C2 exon
chr6:48391946-48392059
Length
564 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GGCATCCTTTTCTCTTTTAGGGC
3' ss Score
11.57
Exon sequences
Seq C1 exon
GATTCTCAGTGGGACAGCCAGAGATGGCTCCCCAGAGTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGATGTCATCCAGAGGAGAGAGCACACTGCACTCCTGCTCAG
Seq A exon
GTAAGTGGGTACCATGGAGTGTGGCTCTGGAGGGAATATTCCTTCTTCCACAAGCTATCTGTTAAGCACCTACTCTGCTGGAAGCTATTCCGGACAGTTGTAAAACCTTAGGCACTAAATAGACCTAGGTCCTTCCCTGCGAGGAACTTAATCTTAGAATGGGCAGCAGTCAGCCAACAAGAAATGTAAGCATGCTAAAAATTGTAAGCCACCGTAGAAGACAGAAAGTGCTATAGGGGTGATAACAGCACAGTGAGAGGGACCAAGTGGCTGCAGGTGGGCCGAGGCAGGAATGCCTAAGGCGAGATCTAGCCTGGCTCCTTCCCATTCTCTTTCCTCACATGTTTTGCCTTGGAGCTTATAAAACACATAGTCCAGAAATTCCTTACAATTGTGGCTCCTGTCCACCCTTAGCACCTGCTCTGGCTATCTGGAATCTGCCTTTGCTGGTATGATGTAGAACAGAGATCTTTGGGAAGTTCAGGCTTGCCTTCTAGAACCAATGGGGTTTGCTTTTCATGTGTGATGTTTTTGGAGTCCTTGGGGCATCCTTTTCTCTTTTAG
Seq C2 exon
GGCATGAGACTCCTGGCCAGAAAGAAGGCATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCAGTACCCCACAGAAGGCCGAACCTGCAGGCTCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-Zfp467:NM_001085415:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCAGTGGGACAGCCAGA
R:
GGACAGAGCCTGCAGGTTC
Band lengths:
224-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: