HsaINT0187384 @ hg38
Intron Retention
Gene
ENSG00000198298 | ZNF485
Description
zinc finger protein 485 [Source:HGNC Symbol;Acc:HGNC:23440]
Coordinates
chr10:43608614-43609350:+
Coord C1 exon
chr10:43608614-43608740
Coord A exon
chr10:43608741-43609254
Coord C2 exon
chr10:43609255-43609350
Length
514 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCCTTTTTCTTTATGAACAGGGC
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGACCGCTGACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTGAGTGGAGACACCTGGATGCTGCTCAGCGGGCCCTGTACAGGGATGTGATGCTGGAGAACTATGGGAATCTGGTGTCTGTGG
Seq A exon
GTGAGGATGGCTTTCTCCTTGACTCAGGATTGGTCTGCTGGGCAACTTTGTGTTTTCACAGGGTGAATGGTTTGGGGTATTGAAAAAATCTTAAATGATGTGCTTTTTGTTTTGTTTTTCTTAAGTATGGGCTTAGAGGCTGGAGTTTATGCCCCTTACACCCCTCAAGAAAGGTCAGAGCCATACAGAGTTAAGATGGGTAGCTTTGTGGTGCCAACTAGCCCAGTTCTGGAATGTTTCTGTGTCATGATTCATCTGCCTCCCAAAATAGGAGTTTCTCGTCCTCCAGGAGGACCTGGTTTTCTAGTTGACTTTGCCCCCTCCCTTTGCTTTACTTCATGAGTTGGACATCCTGGGTGCCACCCTCTAGGCCTCTCTGACCTGTCCATGCTCATTGCAGATGCTCAAGTTGACACTGAGGTCTGGAGTGACTGCTTGTGCTTGTAACCGCCATCACATTCCTTTTCATTCATTTTTTTTTTCTTCCTCTAAGATCCTTTTTCTTTATGAACAG
Seq C2 exon
GGCTTCTCTCTTCCAAACCAAAACTAATTACTCAGTTGGAGCAAGGGGCAGAGCCCTGGACTGAGGTGCGAGAGGCTCCATCAGGCACACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198298:ENST00000361807:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACATTTGGGGATGTGGCT
R:
CATGTGTGCCTGATGGAGCC
Band lengths:
214-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains