BtaINT0164950 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005017 | ZNF169
Description
zinc finger protein 169 [Source:HGNC Symbol;Acc:HGNC:12957]
Coordinates
chr8:86955749-86956552:+
Coord C1 exon
chr8:86955749-86955875
Coord A exon
chr8:86955876-86956456
Coord C2 exon
chr8:86956457-86956552
Length
581 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTTTCCCCTGTGGGTAGGAA
3' ss Score
8.31
Exon sequences
Seq C1 exon
GCATTAATGGCCTTCAGGGATGTGGCTGTGGCCTTCACCCAGAAGGAATGGAAGCTACTGAGTCCTGCTCAGAGGACCCTGTATCGGGATGTAATGCTGGAGAACTACAGCCATATGGTGTCGCTGG
Seq A exon
GTAAGGATGACCTGTCCCATGTCTCAGACTCTGCCTGTAGGCCTCTTAAGATTTAATGGAGTAGCCACCATGCTTTTGGCTCAGAAAGCAACATGTGTTTTCTCTATACCTCAGAGAATGTCTGGATTCTGTAGAGTTGGAAATGGTGAAGTTGTGCATGTGTGTGTATTTGTGTGATATGACACTGCATTTCTAGGCCCCTTCTAAGGCCAGGCCCTCCTTTAAAGTGATCTTACTTCAATTAAAACATGTACAATATCATAAAAAAAAAATAACCAACCACAATAAATGTAGTCCAGTTAAATAAAAAAAAAAAAATAAATAAAGTGATCTTACTTCAGACGGCAGAGTATTTATATTCATTCAAGCACAGGGGAGAATCATATACTGCCGTTAGATCTGGGATTCCTCCCGCCCCTTAGTCATCTTTTCTCAGCATTCAGAGAATCTTTGTCCCCATCCATGCCCCCTGCCTGGCTTTCCTACCCGCTTCTGAGTCATTGCATTCCCTGACTGAATTCTGTGATAGCCTCTTAAGTCACTAACCGAAGGTCACCTTGATTTTTTTCCCCTGTGGGTAG
Seq C2 exon
GAATTGCCTTTCCTAAACCAAAACTCATTATACAACTGGAACAAGGAGACGAGCCCTGGAGAGAGGAGAGTGAATGTCTTCTGGACCTTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005017:ENSBTAT00000006604:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAATGGCCTTCAGGGATGT
R:
CTGCACAAAGGTCCAGAAGAC
Band lengths:
223-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]