HsaINT0186295 @ hg19
Intron Retention
Gene
ENSG00000175787 | ZNF169
Description
zinc finger protein 169 [Source:HGNC Symbol;Acc:12957]
Coordinates
chr9:97054623-97055351:+
Coord C1 exon
chr9:97054623-97054749
Coord A exon
chr9:97054750-97055255
Coord C2 exon
chr9:97055256-97055351
Length
506 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTTTTTCCTGTGAGTAGGAA
3' ss Score
7.11
Exon sequences
Seq C1 exon
GCATTGATGGCCTTCCGGGATGTGGCTGTGGCCTTCACCCAGAAGGAGTGGAAGCTATTGAGTTCTGCTCAGAGGACCCTGTACAGGGAGGTGATGCTGGAGAACTACAGCCATCTGGTCTCCCTGG
Seq A exon
GTAAGGCTGGCCTGTTTAAGGTTTCAGATTCTGCTTGTGGGTATTTTAAGCTCTTACATAGCAAGCTGCCATGCTTCTGACTCAGAAAAACAGTTTTTTCCCCTATTCCCCCAGAGAATGCCTGGCTTTCACAGTGCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCACATGCTGTGAGCGTGTGGTGTGTCTGACACTGCATTTTTCAGGCCTGTTTACCCTGGCTGGGCTCCTCCTCTAAGGTTATCCTCCTTCAAAAGGAGGAATATTTTTATTGACTCAAGCACAGGGTAGAATCAACATACTGCCTTTAGGTCTAGGATCCCCTCCCTGTATGCATCCTTTCTTAGCATTCAGACATAGTTTACTCCACCCCTGCACCTCCCTACCACCTTCTGGGTTTATTGCATTCCTGGGTTGGCTCTGAGTTCTGAGATAGCCTCTTAAGCCACTAACTCAAGATCACCTTGGTTTTTTTTTCCTGTGAGTAG
Seq C2 exon
GAATTGCATTTTCCAAACCAAAACTCATCGAACAGCTGGAGCAAGGCGACGAACCTTGGAGAGAGGAGAACGAACATCTTCTGGACCTTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175787-ZNF169:NM_194320:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.449
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGATGGCCTTCCGGGATG
R:
ACAAAGGTCCAGAAGATGTTCGT
Band lengths:
218-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)