RnoINT0167804 @ rn6
Intron Retention
Gene
ENSRNOG00000017092 | Zfp169
Description
zinc finger protein 169 [Source:RGD Symbol;Acc:1304631]
Coordinates
chr17:16455026-16460539:+
Coord C1 exon
chr17:16455026-16455484
Coord A exon
chr17:16455485-16460449
Coord C2 exon
chr17:16460450-16460539
Length
4965 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGTTTGTTTCTCGTGACTAGGAA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTGTACATATCTAATCCCAGCCACCCACAACACTGTGGTAAGAGTTGGGAGTTGAGCTAACATGGACAGTATAGCAAGAACCACTTCGGGTAAAGTAAAATGGAGAATGAAGTAGGAGGATTTAGTCTTCCTGAGTTCAAACCCTGCTATATAGCCACACTAGTTAAAACTGTGGCTTTTGAAGGTCTTGTATATGCCTAGAGCAAAACAGGACACCCAGCGTTTCCGAGTTCTATGTGTGGAACTGGCGTTTGTATATGGAAATTGTCTTCAACACACAGCAGTAAGGTTCAGGGCGGCTTTCATGAGCAGGGATGTGTTCTTGTTACAGGCATTAATGGCTTTTCATGACGTGGCCGTGGCCTTCAGCCAGACGGAGTGGAAGCTGTTGAGTCCTGCTCAGAGGATCCTATACAGGGAAGTGATGCTGGAGAACTATAGCCATCTGGTCTCCCTGG
Seq A exon
GTAAGGCCACCCTGTTTTAAGTCTTGGAGTTTATCTATGGGCATGTTAAACACCTGTGTAGCAGCCAACACCTCTGTTTTACTTTAGAAGGCCCATGTTTTGCAGTGAAATGTGTGTGTACTTGCACACCTGTGTGCTTGTACATGCAATGACTGACAGTGTATTTCTAGGGATGAATACTGATGGCGCCTGCGCTGCCAGTGTGTGGGTATCAGGTGTAGGTCTGCGGGATTGAAAGAAAACACGTACATGGGTCACCCGTTTTCAGAGAGTGCCACCAAGGCTTTACTGAGATCTCCTTATATACCCTGAGGCAAAAGCCGTGGGAAAAACAAGGCAGGTGAAAATCCCCAGCCAGGAAAACAGGAAAAGTCTGTGTGGTGGAAAGTCCCGGGCCCAATCAGGGACATAAACAACTTCTTAACAACAAGTTGGAAGACTCAGTGGAGGGGGAAGGGTGCCATGGAAAGTCCCAGCCCCAAATCAGGGGTCAAGAGCAGCTGCCAAGGATGTAAACAACTTCTTGCTATATAGCAGGCTAAAAGGCTCAGCGAGGGGGAAGGAAAACCCTAAGGTAGGGCCCAACAATTCCCCCTCTTATTTTTTTTTAAGTAGCGTTTATCTTAGGATCAATCTGGGGTTCCAAAACTCTTTCCCATCTCTGAAAACCCTGTCAGCCTCAGGGTTTCTGTCTTAGGTGAGTATGGTCCCAGAAGGGTGCCCGTCTTTGGCTAACTACTTGTCCTACAAACTGAGCCTAATTTGGGCCAATGGATTAGTCCTGGCCAATGAAAATCAAACCTGTTTGGTTTCAGCCTGAGACTGGATCTGTTGGTACTTCAAAACAGCCCAGGGGCAGCTGCTAAGAGTGAGAAATCAAGATAAGCATTTAAATCCAACAGCCTTGTTGCTATTAAGGACCTTAACAGGGGTTACACACAGAATGATAAAAGGTAGAACAAGATATAATATGGGTTCCCCAAAGGAAGTCCAATTGAGAGCAATTTGTTGGTTGACATTAATAATGACCAACTGAGGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTGTGAAGACAGCTACAGTGTACTTATATATAAAATAAATGAATAAATCTTAAAAAAAAAAAGAATGACCAACTGAATCTGAATATTAACGCTATTCTGCACAGTCAATGCCGTGGCGACTTCTCCAGAATGTATCCTGTATCCACAGTCCCAACGACAGCTGCCAACTGAGATATGGCCACACTGGCCACTGCAGCAGCAATGGCTGAAGTGGCAATGGCAGCAGTGACTGTCGCAGTAATGCCAAAGTCCCTTTTATGCCTGTAGAGTACCACTGGGCATCAGCCTTCATCTAGAGGGGTATGGGGATCACACCAGGAACTCGAACAATCCATGCAGAATCTTCCTGTTCCCAGCAACTGGTCAGTAGGATAGGACCTGTAAAGGTAGAATCTCCTCCCTTGACACTGCCTGAGTCCCATTCTGAACCAAAAGAAAGGGGGTGCCAACACGCCTGGCACAGATTTCAGAAAATTTTCTCTTAATTGACCAAAGTCTCCAATATCGAAAAGAAATATTGAGTCTTTTCTGGAGCAGCAGCTACTCCCCAAAATTTAAAGCACGTCGTAAGCTTGTAGTAAAATTAAAATGTCTATATAATGAATAATATACACTGAAAGATTCAAAGTCTTAGCTTCTTGTATTGAAGCAGTGACAAAAAAGTTTTTACATGATGTAGGGCCAAGAGTGATTCCTTGAGGAAAAACTTTCCAATGGTATCATTTCATGGGCTCTCCAAAATTATAAGCAAGCTCACTAAATGAAAATCTTTCACAATCACCAGGATGTAAAGAAAGAACATAAAAACAATATTTTTTTTTGTCTATTTTATTTTATGTATGTGAGAACACTGCTGCTGTCTTCCGACACGAGAAGAGGGCAGCAGATCCCATTACAGATGGTTGAGAGCCACCATGTGGTTGCTGAGAATTGAACTCATGACCTCTGGGAGAGCAGCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCATAAAAACAATATTTTAAATCTATAATAATTCTACATCTATTTCTTGAAATAGCAGTTGGAGTGAGCAAACAGGCTGTAATGCTCTTAGAAGTTCCATAGCCTCATCAACCTTTTGTAAATCCTGTAACAATCTCCACCTGTTTGATTTTTTTTTTCTTAATTACAAACATGTGTGAGTTAGAATCTTGAGCCTGTCTGTGATCAAACTGCAAACTGCAGCCAATGTTTGGCTACACTGGCAATCTTTAACCACAATCTTTAAGTTTCCCTTGTAACACCACAGCACAACCATAACTTTGGAAAGCAAAACTCAACCTCCAACAAACCATCTGTTCTCCAAAATCCAGTCTTTCCAAAACACCATGTCCATTCCTCATGCTTTAAAGTTTGACTGCCAATTCTTGCATATGAACGAACGATTGTGTGGGCTCTAATTTCTCAACAAAGAGACATTGCCCTAAATTCTTTATAAGTCTGGTTTCTAGGTTAAGAATTATATTAAAATATTATTCCAATTTAGACCTGTTTCCCTGGATTGGTTCATACCACGGGTTGTCTAGAATGACTCCAGTTTGTACAAATTTTTAACCATACCCAATAACTTAAAAGCCAGTAAACTATAACCAAGACATGTAGAGCATATTATACATTTAAAACTAATCAGAAACAAAAAATGAAGTGACTACACATATCTTTAATATTTAGATCAAACACCATTTTACCTGTTCTAACTGATTTTAAGAGAAGCACCTTGTCACCCCTGTTGAGTCCAGTAATCACAGTCAAAGATTTTTCTAAGAGAAACAGCCATCAGTTCCATTACCATAGAAGCTGTGAAGCTCCTGGTGCCTTTAGGATCGGCTAGTGTAAACATTTAGCCAGCCCCCTGGGGAGCTTCCCCAGCGGACCTAGGCTCCTAGTTACAGATGCAGGGCTCCAAAAGCCAATTGAAACTTTTTTTTATTTATTTGTTCCTTTCTTGAAAGGAATTAAAACTACATCAAGGGGTGAATCAACCAGCATTTAAAGTTTTAACCATTTTTTTTCTTTTAAACACGAAACACAAAACATTCAAGCAACGAGAAGCAAAACCCAGACATAAACTGACATACATGGACAGCTTGGTGCACCAAGGACAGACAATAGACATACAAGGAAAAAACTAGATGGCATCCCACCAAAGGAACCCAGATATCCTACCTAAAGGACCCAGAACCAGAAATAAGCACTTCTCCAATAGCAGCAAGGAGGCAGGACCATCTCCTGCCTTCCTTCTGTCCCTTGGAGAGCTCTTAAAAAGCTTAAGCTCATTTTCCTTCTCTTGACAAAGCATCTGTGGAGAGTCCGGGAGGACTGTTTTTCTCAACCCCATTCTTTCTCTTGTCCAGGGTGTAAACTGTCTCTAGTCAGGGTCCAAAGACTAAAAGCATCTATGAGAATTGACTTTGCTTCTCTAGATTTTAGCATAACTCTAAAAGAACACATGCACAAAAACATTTTATCGTTATTACCTTGTCCCCTTTTACAAGGTTTACTCACCACTACCCCAAATCTTTATTTTTCTTTGCACATGCTTTCAATTCCTGCGGTCCTTCTGAATTCTGCTTACTGGGGCCTTTCCTGGCCCATTTTCTCCCAATTTCTCAGTCTCCCTTTCCAATGTTATCTCCTCATCTGCATCAGACTCATAGGAAGTTGAATCAGAGTCACTGCTGTCCCTACAAATTGACTCCTTAGTATGTTCATCCTGTGCAGTTCCAAATGTCCTTTCAATTTCCATCACCTGTTCTTTGACCCTCTCATTTTCACTAAGTAAAGCGTCCTTCACTAACCTCCATAAGGAAAAGGTAGCAATTGGAATGCTCTCTGACCACCCATCTTGGAGGGCCTTCTGTAAATCCCCTTTAACCTGTTTCCAATCTGGAATATTCAAACTGCCACTAGCTATAAACCAAGGACTGACTTGTTCTATAGTTTTAACAAAAATCTTGGGCTGTCTTTACCTTCATACCAGTACCTTGTTGTTTGAGTAAACTTACAAGCTGATCTACGACCAATAACGAGGAACTTGTAGTTCCCATCGCTAAGACAAAACCTTTGTAGCTCTACTTTGCCCCGTGGTCACCGCTTGTCCCCAATACGTTCCGCTTCCTTGCCGGTCCATCTTTTGGAACGATCCTGTCAGGTTGTCCTCTCTTTCCCGATCTCGGTGGGACCTCCAGATGACGGCACCTGAGCTGCCAGTGTGTGAATATCGGGCGTAGGTCTGCAGGATTGAAAGAAAACACGTACATGGGTCACCCGTTTTCAGAGAGTGCAACCAAGGCTTTACTGAGATCTCCTTATATACCCTGAGGCAAAAGCCGTGGGAAAAACAAGGCAGGTGAAAATCCCCAGCCAGGAAAACAGGGAAAGTCTGTGTGGTGGAAAGTCCCGGGCCCAATCAGGGACATAAACAACTTAACAACAACAAGTTGGAAGGCTCAGTGGAGGGGGAAGGGTGCCATGGAAAGTCCCAGCCCCAAATCAGGGGTCAAGAGCAGCTGCCAAGGGTGTAAACAACTTCTTGCTATAGCAGGCTAAAAGGCTCATCGAGGGGGAAGGGAAACACCCCAAGGTAGGGCCCAACAGATTACCCTGCTTTTGATTCCCCTGTCCTTGTTCATTCTTTCTCAGTATTCTGATATTCTTTCCCCATCTCTCTACCTCCCTTCTTGGTGTTTAGCATCTCCTAAGTTGGCCTGGAGTTCTGTTGTAGCCTCTTCAGCTGCTAGCCTAAGGTCACTTTGGGTTTGTTTCTCGTGACTAG
Seq C2 exon
GAATTGCTTTTCCCAAACCGAAACTCATCACACAGCTGGAACAAGGAACAGAGCCCTGGAGAGATGGATGTCTTCTGGACCTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017092:ENSRNOT00000022932:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=46.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]