HsaINT0186295 @ hg38
Intron Retention
Gene
ENSG00000175787 | ZNF169
Description
zinc finger protein 169 [Source:HGNC Symbol;Acc:HGNC:12957]
Coordinates
chr9:94292341-94293069:+
Coord C1 exon
chr9:94292341-94292467
Coord A exon
chr9:94292468-94292973
Coord C2 exon
chr9:94292974-94293069
Length
506 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTTTTTCCTGTGAGTAGGAA
3' ss Score
7.11
Exon sequences
Seq C1 exon
GCATTGATGGCCTTCCGGGATGTGGCTGTGGCCTTCACCCAGAAGGAGTGGAAGCTATTGAGTTCTGCTCAGAGGACCCTGTACAGGGAGGTGATGCTGGAGAACTACAGCCATCTGGTCTCCCTGG
Seq A exon
GTAAGGCTGGCCTGTTTAAGGTTTCAGATTCTGCTTGTGGGTATTTTAAGCTCTTACATAGCAAGCTGCCATGCTTCTGACTCAGAAAAACAGTTTTTTCCCCTATTCCCCCAGAGAATGCCTGGCTTTCACAGTGCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCACATGCTGTGAGCGTGTGGTGTGTCTGACACTGCATTTTTCAGGCCTGTTTACCCTGGCTGGGCTCCTCCTCTAAGGTTATCCTCCTTCAAAAGGAGGAATATTTTTATTGACTCAAGCACAGGGTAGAATCAACATACTGCCTTTAGGTCTAGGATCCCCTCCCTGTATGCATCCTTTCTTAGCATTCAGACATAGTTTACTCCACCCCTGCACCTCCCTACCACCTTCTGGGTTTATTGCATTCCTGGGTTGGCTCTGAGTTCTGAGATAGCCTCTTAAGCCACTAACTCAAGATCACCTTGGTTTTTTTTTCCTGTGAGTAG
Seq C2 exon
GAATTGCATTTTCCAAACCAAAACTCATCGAACAGCTGGAGCAAGGCGACGAACCTTGGAGAGAGGAGAACGAACATCTTCTGGACCTTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175787:ENST00000340911:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGATGGCCTTCCGGGATG
R:
ACAAAGGTCCAGAAGATGTTCGT
Band lengths:
218-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains