HsaINT0187421 @ hg19
Intron Retention
Gene
ENSG00000197037 | ZNF498
Description
zinc finger protein 498 [Source:HGNC Symbol;Acc:21961]
Coordinates
chr7:99218996-99220263:+
Coord C1 exon
chr7:99218996-99219197
Coord A exon
chr7:99219198-99220171
Coord C2 exon
chr7:99220172-99220263
Length
974 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGCTTTTTGTCCCTGCTCAGCAC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GTTCCATGCCACAGGCAGGGAGAGCAGGAGGAAACAGCACTTTGCAGAGGCGCTTGGGAGCCAGGCATCCAGCTGGGGCCAGTGGAGGTCAAGCCTGAATGGGGGATGCCCCCTGGGGAAGGAGTTCAAGGTCCAGACCCAGGTACCGAGGAGCAGCTCAGTCAGGACCCTGGAGATGAGACACGGGCCTTCCAGGAGCAAG
Seq A exon
GTGAGTAAGACGCAGATAGTGGGGATGTCAGGTCATAGGAAACAGTGCTGTGCAGCCAACTCTCTTCAGAAACCCAGCAATGGAGCAACTAAGTTACCCACGAGGTGTAATTGTGAATTTTCTTGGCTACTTCCTCCACCTTAGGAAATAGATGAAGTGAAATTGTTTCTTCTCCCTTTACCCTCTGGTGTCTGGAGGGGATATCTGGGATCATGCTTTCTTATTATTTCTCTTTTCTTTCCCTCAGATCCCTTCTAGAAACTACCAAGAAATATTCAGCTGACTTGCAGGAATACTTTTTCAGTAGGCAGATAAACCATATCCCCCAAAGTAATATGTAGCTTTCTTTCTTTCTTTCTTTCTTTTTTGAGATGGGGTCTCACTCTGTCACCCAGGTTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTTTGCCTCCTGGGTTGAAGCAATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGCCTACAGGCATGTGCCACCATGCCCTGTTAATTTTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGTCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCCACGTAGCTTTATTTTGTTATTGAATCTCATAGGAGGTTATTCCCAGAGTGTGACTGGGTAGCATGGGTAGCCCTGGACGGACAGGGCCGGGACAATCTTGCCAGCTGAGAACAGGAGACACCCAGGCCCCAGCTGAGAATAGGGCAAGGGACACCCAGGCCCCTGTGCATGGGAAAGTGTGGTACCAGAGTGAAAAGGGATTCTGTCTGGAGTCTTCTGGTTCCTGAGGTTGTGAGCATCTGGTAGGGGACACATTTGAACGAGCTAACAGCATAACATCACTGATCCTTCTGATCTTTCTCATGCTTTTTGTCCCTGCTCAG
Seq C2 exon
CACTACCTGTTCTGCAGGCGGGTCCTGGCCTCCCCGCAGTGAATCCCAGAGACCAAGAGATGGCAGCTGGGTTCTTTACTGCTGGATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037-ZNF498:NM_145115:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGAGCAGGAGGAAACA
R:
TGCGATCCAGCAGTAAAGAACC
Band lengths:
278-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)