MmuINT0179337 @ mm9
Intron Retention
Gene
ENSMUSG00000070420 | Zfp498
Description
zinc finger protein 498 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:146047177-146048268:+
Coord C1 exon
chr5:146047177-146047378
Coord A exon
chr5:146047379-146048176
Coord C2 exon
chr5:146048177-146048268
Length
798 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGGGTTTTGTTTCCGCCCAGCAT
3' ss Score
5.09
Exon sequences
Seq C1 exon
GTTCCATGCCATGCCCAGGGAGAGCAGCTGGTCACAGCCCTTGGCGGAGCATCGTGGCAATCAGGCATCCACCTGGGGCCGGTAGAAGTCAAACCTGAGTGGGGGATACCCCAGGGGGAAGGAGTTCAGAGCCTAGGCCCAAGCACCACAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAACAAG
Seq A exon
GTAAGACTCAGAGAATGAAGATGTGTGAAGATGTGGGTCTCTTCCACCCACCATTCTTTCAGAAACTCACTGCTGGGCTAAGTAGTTATGGGCAAGATGCAATCAATTCTGAGTTTTATGGGCTACCTCCTCTGCCCCAGTAGAAAGCAGATGAAGGTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGTATGCGCCACCACACCCAGCTATTTTTTTTTTTTTTTCTTTCTTACACCTTGACCAGTTTTCTGGGGTATGTCTAGAACCGTGTTCTCCTATCATTTCTTCTTCCTTCTCCTCACATCCTTCTAGAGCCTCTAGGCACTGTGCTGGTGATAGGGAGATTTATCTATTAAATGGGAAAACAAACCACACCCACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAACGAGAACTGTCATTATGAGAGACTCAGGAGTGTGCCTAAGAGAACGAGAACTGTCATTATGAGAGACTCAGGAGTGTGCCTAACTCTGAGGGGACAGGGCTGGGACAGTCTTAGGCAGAACTCCTGGCTGTGGGTCACTGTGGTACTGATGTATTTCTCTGTGGTCTGTGGGTCCTAAGGTGGTGTGTCTGAGTGGGGTGCCTTTGAGCTGCCAGACAACTGCCCTGATCCCTCTGTGGGTTTTGTTTCCGCCCAG
Seq C2 exon
CATTGCCCATTCTTCATGTGGGTCCAGGGCTTCCCTCTGTGAGTGCCAGAGACCAAGAGATGGCTGCTGGATTCCTTGCAGCCACGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420-Zfp498:NM_001081431:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.1=1.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCATGCCATGCCCAGG
R:
CTGGGACGTGGCTGCAAG
Band lengths:
294-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: