MmuINT0179337 @ mm10
Intron Retention
Gene
ENSMUSG00000070420 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:145286308-145287399:+
Coord C1 exon
chr5:145286308-145286509
Coord A exon
chr5:145286510-145287307
Coord C2 exon
chr5:145287308-145287399
Length
798 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGGGTTTTGTTTCCGCCCAGCAT
3' ss Score
5.09
Exon sequences
Seq C1 exon
GTTCCATGCCATGCCCAGGGAGAGCAGCTGGTCACAGCCCTTGGCGGAGCATCGTGGCAATCAGGCATCCACCTGGGGCCGGTAGAAGTCAAACCTGAGTGGGGGATACCCCAGGGGGAAGGAGTTCAGAGCCTAGGCCCAAGCACCACAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAACAAG
Seq A exon
GTAAGACTCAGAGAATGAAGATGTGTGAAGATGTGGGTCTCTTCCACCCACCATTCTTTCAGAAACTCACTGCTGGGCTAAGTAGTTATGGGCAAGATGCAATCAATTCTGAGTTTTATGGGCTACCTCCTCTGCCCCAGTAGAAAGCAGATGAAGGTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGTATGCGCCACCACACCCAGCTATTTTTTTTTTTTTTTCTTTCTTACACCTTGACCAGTTTTCTGGGGTATGTCTAGAACCGTGTTCTCCTATCATTTCTTCTTCCTTCTCCTCACATCCTTCTAGAGCCTCTAGGCACTGTGCTGGTGATAGGGAGATTTATCTATTAAATGGGAAAACAAACCACACCCACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAACGAGAACTGTCATTATGAGAGACTCAGGAGTGTGCCTAAGAGAACGAGAACTGTCATTATGAGAGACTCAGGAGTGTGCCTAACTCTGAGGGGACAGGGCTGGGACAGTCTTAGGCAGAACTCCTGGCTGTGGGTCACTGTGGTACTGATGTATTTCTCTGTGGTCTGTGGGTCCTAAGGTGGTGTGTCTGAGTGGGGTGCCTTTGAGCTGCCAGACAACTGCCCTGATCCCTCTGTGGGTTTTGTTTCCGCCCAG
Seq C2 exon
CATTGCCCATTCTTCATGTGGGTCCAGGGCTTCCCTCTGTGAGTGCCAGAGACCAAGAGATGGCTGCTGGATTCCTTGCAGCCACGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420:ENSMUST00000199563:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.1=1.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCATGCCATGCCCAGG
R:
CTGGGACGTGGCTGCAAG
Band lengths:
294-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types