Special

HsaINT0187636 @ hg38

Intron Retention

Gene
ENSG00000130544 | ZNF557
Description
zinc finger protein 557 [Source:HGNC Symbol;Acc:HGNC:28632]
Coordinates
chr19:7081970-7084218:+
Coord C1 exon
chr19:7081970-7082052
Coord A exon
chr19:7082053-7082877
Coord C2 exon
chr19:7082878-7084218
Length
825 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGTCATCTCTTAATCAATAGGAG
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATGTGGAGAATCCATTTAAAGCCAAAGGGTTAACTCCTAAGCTGCATGTTTTTCGAAAAGAACAATCTAGAAATATGAAAATG
Seq A exon
GTAAGACTAACATGGGTGATTCCTGGTTTTTTTCATGGTAGAATGCCCTACATGAGAAAAGCCACAAGGACTGGCCTTGTTGGCCAGGCACAGTGGCTCATGCCTTTAATCCCAGCACCTTGGGAAGCTGAGGCAGTTGGATCATGAGGTCAGGTCAGGAGTTGGAGACCAGCCTGGCCAATACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAACTTAGCTGGGTGTGGTGATGCGCACCTGTAATCCCAAATACTTGGGAAGCTGAAACAGAAGAATCACTTGAACCCTGGAGGTGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAGTGGCTTTATTAAATAGTTATTAAAGGAAAGTGTCATTTTTTTCAAAGATAAAGTAGTACCTCTGGAGAGATACTGTGAAATTATTTTGAATTTGGAGAAAAGCATTAGTTAGCCCCAAACTTGTTTTTCCTGAGAATTCCCACAAGTAAATATTTCCAGTAGTCTGAGTCAGATATTGGATATTTGAAAAAGAAATTAGCCTTAAATTTATCAAAAATACTCTGTGAATATGATAAAGATTTGTAGAAAGAATCCATCTTCTTTAAATGCTAAGAATTCAAACTGACAGAAGCCATGTACCAGCACTCATGATGGCAAAAACATTAATTCCAATACTATGATACACAACAGAATTCCTGGGAGAGGAAATTCCTCTGACAGCATTCAATGTTAAAAATATTATAAATGGTACTTATTGTCATCTCTTAATCAATAG
Seq C2 exon
GAGAGGAATCATCTTGGAGCAACACTCAACGAATGTAATCAGTGTTTTAAAGTCTTCAGCACAAAATCTTCCCTTACACGGCACAGGAAGATTCATACTGGAGAAAGACCCTATGGCTGCAGTGAATGTGGGAAATCCTACAGCAGTAGATCTTACCTTGCTGTTCATAAGAGAATCCACAATGGGGAGAAACCCTATGAATGCAATGACTGTGGGAAAACCTTCAGCAGCAGATCTTACCTTACTGTTCATAAGAGAATCCACAATGGGGAGAAACCCTACGAATGCAGTGACTGTGGGAAAACCTTCAGCAATTCCTCATACCTCAGACCGCACTTGAGAATTCACACTGGAGAAAAACCGTACAAATGTAACCAGTGTTTTCGTGAGTTCCGCACTCAGTCAATCTTCACAAGGCACAAGAGAGTTCATACGGGGGAGGGTCATTATGTATGTAATCAGTGTGGAAAGGCTTTCGGCACGAGGTCATCTCTTTCTTCGCACTATAGCATTCATACAGGGGAGTACCCTTACGAATGCCACGATTGTGGGAGAACCTTCAGGAGGAGGTCGAATCTGACACAGCACATAAGAACTCATACTGGAGAAAAACCCTACACATGTAATGAGTGTGGGAAATCCTTTACCAATAGCTTTTCTCTTACAATTCACAGGAGAATACATAATGGAGAGAAATCCTATGAGTGCAGTGATTGTGGAAAATCCTTTAATGTTCTCTCATCCGTTAAGAAACACATGAGAACTCACACTGGAAAAAAACCCTATGAATGTAATTATTGCGGGAAATCCTTCACAAGTAACTCCTACCTTTCTGTGCATACGAGAATGCATAATAGGCAAATGTGAATTCAATAACTGTGGGAAAAGCATTCATTGATCTTTCATGCCTCAGATAACATGAGCAAACTCTAACAAGATGTATGAATCACCTGCTACTGTGTAACAAATTACCCCCCAAAATTTTGTGGCTTCAAACAAAAACACTTGTTATCTCAAAATTTTTGTAGGTCAGGAATTCAGAAACAACATAGCTCTATAGTTCTTCAGGATATCTCAAGAGGTTACAGTCCAGATGTCAGCAGAACTGTAATCATCCAGAATTGTTACTGGTGAAGGGACCACTTCCAAATGGCTTACAAGCCCGACAAGTGCATGCTAGCTGTTTCCAAGGGAGCTGCGCTTCCAAATCACGTAGGCCTCTCAACAGGGCTGAGTTTCTTTATGGAAGCAACTTCTCCCCAAAGCCAGTGATCTAAAGGAGCCAACACAGAAAGCATAATGTCTTTTATGACCTAGCTTCAGTGAGATATGTTTTCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130544:ENST00000252840:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.179 A=NA C2=0.069
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTAACTCCTAAGCTGCA
R:
CCCACAGTCACTGCATTCGTA
Band lengths:
358-1183
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains