Special

HsaEX6092384 @ hg38

Exon Skipping

Gene
ENSG00000130544 | ZNF557
Description
zinc finger protein 557 [Source:HGNC Symbol;Acc:HGNC:28632]
Coordinates
chr19:7081360-7084218:+
Coord C1 exon
chr19:7081360-7081455
Coord A exon
chr19:7081970-7082052
Coord C2 exon
chr19:7082878-7084218
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTAACTTGTTTCAGATG
3' ss Score
9.55
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGAACCAAGTTGATAAACCTAGGCTGATCTCCCAGCTGGAGCAAGAAGATAAAGTGATGACAGAAGAGAGAGGAATTCTCTCAGGTACCTGTCCAG
Seq A exon
ATGTGGAGAATCCATTTAAAGCCAAAGGGTTAACTCCTAAGCTGCATGTTTTTCGAAAAGAACAATCTAGAAATATGAAAATG
Seq C2 exon
GAGAGGAATCATCTTGGAGCAACACTCAACGAATGTAATCAGTGTTTTAAAGTCTTCAGCACAAAATCTTCCCTTACACGGCACAGGAAGATTCATACTGGAGAAAGACCCTATGGCTGCAGTGAATGTGGGAAATCCTACAGCAGTAGATCTTACCTTGCTGTTCATAAGAGAATCCACAATGGGGAGAAACCCTATGAATGCAATGACTGTGGGAAAACCTTCAGCAGCAGATCTTACCTTACTGTTCATAAGAGAATCCACAATGGGGAGAAACCCTACGAATGCAGTGACTGTGGGAAAACCTTCAGCAATTCCTCATACCTCAGACCGCACTTGAGAATTCACACTGGAGAAAAACCGTACAAATGTAACCAGTGTTTTCGTGAGTTCCGCACTCAGTCAATCTTCACAAGGCACAAGAGAGTTCATACGGGGGAGGGTCATTATGTATGTAATCAGTGTGGAAAGGCTTTCGGCACGAGGTCATCTCTTTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130544_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.242 A=0.179 C2=0.069
Domain overlap (PFAM):

C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGCTGGAGCAAGAAGAT
R:
CCAGTATGAATCTTCCTGTGCCG
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains