MmuEX6064136 @ mm9

Exon Skipping

Gene

ENSMUSG00000074500 | Zfp558

Description

zinc finger protein 558 [Source:MGI Symbol;Acc:MGI:1921681]

Coordinates

chr9:18261245-18264196:-

Coord C1 exon

chr9:18264101-18264196

Coord A exon

chr9:18261945-18262039

Coord C2 exon

chr9:18261245-18261496

Length

95 bp

Sequences

Splice sites

3' ss Seq

TTCTTTTAAATTTGTTTCAGATT

3' ss Score

9.96

5' ss Seq

GAGGTAATG

5' ss Score

8.73

Exon sequences

Seq C1 exon

GGCAGCACCTTGATAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGACAGAGGAATTATTCCAGGCATCCATCCAG

Seq A exon

ATTTGGAGAAGGTACTTAAAGCCAAATGGCTAACTCCTAAGAATCTTATTTTTAGTAAAGAACATGATAACGGTGGAAAAACAGTACAACTGGAG

Seq C2 exon

GAAAGAGGTCATCATGGAATGAAAGTCAATGAGTGCAATCAATGTTTTAAAGTCTTCAGCACAAAATCTAACCTTACTCAGCACAAGAGAATTCATACTGGAGAAAAACCATATGACTGTACCCAGTGTGGAAAATCCTTCCGCAGCAAATCTTATCTTACTGTTCACAGAAGAATCCATAATGGGGAAAAACCTTTTGAATGCAATCACTGTGGGAAAGCATTTAGCGATCCCTCATCCCTCAGACTTCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000074500-'12-16,'12-15,13-16=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.027 A=0.188 C2=0.042

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9)

Main Inclusion Isoform:

ENSMUSP00000128631