HsaEX6092672 @ hg19

Exon Skipping

Gene

ENSG00000167785 | ZNF558

Description

zinc finger protein 558 [Source:HGNC Symbol;Acc:26422]

Coordinates

chr19:8920382-8923898:-

Coord C1 exon

chr19:8923803-8923898

Coord A exon

chr19:8923237-8923319

Coord C2 exon

chr19:8920382-8922739

Length

83 bp

Sequences

Splice sites

3' ss Seq

TTCTTTTCAATTTGTTTCAGATT

3' ss Score

10.52

5' ss Seq

ACGGTAAGA

5' ss Score

10.65

Exon sequences

Seq C1 exon

GGTGTCGTGTTAATAAACCCAGTCTGATATCCCAGTTGGAACAAGACAAGAAGGTGGTGACAGAGGAAAGAGGAATTCTACCAAGCACCTGTCCAG

Seq A exon

ATTTGGAGACTCTACTTAAAGCCAAATGGTTAACTCCTAAGAAGAATGTTTTCAGAAAAGAACAGTCTAAAGGTGTAAAAACG

Seq C2 exon

GAAAGAAGTCATCGTGGAGTGAAACTCAATGAATGTAATCAGTGTTTTAAAGTCTTCAGCACGAAATCTAACCTAACTCAGCACAAGAGAATTCATACTGGAGAAAAACCCTATGACTGTAGTCAATGTGGGAAGTCCTTCAGTAGCAGATCTTACCTTACTATTCATAAGAGAATCCATAATGGGGAGAAACCCTATGAATGCAATCACTGTGGGAAAGCATTTAGTGATCCCTCATCCCTTAGACTGCATTTGAGAATTCACACTGGAGAAAAACCCTATGAATGTAACCAGTGTTTTCACGTTTTCCGCACCAGTTGTAACCTCAAAAGCCACAAGAGGATTCACACGGGGGAGAATCACCATGAATGTAATCAGTGTGGAAAAGCTTTCAGCACAAGGTCCTCTCTCACTGGGCACAATAGCATTCATACAGGGGAGAAACCTTATGAATGTCACGATTGTGGGAAAACCTTCAGGAAGAGCTCCTATCTGACACA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000167785-'8-11,'8-10,9-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.030 A=0.250 C2=0.038

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0)

Main Inclusion Isoform:

ENSP00000301475