BtaEX6038277 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000030929 | ZNF558

Description

zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]

Coordinates

chr7:17228412-17230346:+

Coord C1 exon

chr7:17228412-17228513

Coord A exon

chr7:17228995-17229077

Coord C2 exon

chr7:17229564-17230346

Length

83 bp

Sequences

Splice sites

3' ss Seq

TTCTTTTCAATTTGTTTTAGATT

3' ss Score

10.54

5' ss Seq

GCGGTAAGA

5' ss Score

9.63

Exon sequences

Seq C1 exon

GAATAGGATATCATGTTGATAAACCCAGTCTGATCTCTCAGTTGGAGCAAGAAGACAAGGTGGTGACAGAGGAAGGAGGAATTCTCCCAGGCACCCGTCCAG

Seq A exon

ATTTGGAGACGGTACTTAAAGCAAAATGGTTAACTCCAAAGAAGCCTATTTTTAGAAAAGAACATTCTAATGATGTTAGAGCG

Seq C2 exon

GAGAGAAGTCATCTGGGAGTGAAACTCAATGAATGTAATCAGTGTTTTAAAGTCTTCAGCACAAAATCTAACCTTACTCAGCACAAAAGAATTCATACTGGAGAAAAACCCTATGACTGTAATCAGTGTGGAAAATCCTTCAGCAGTAGATCTTACCTTACTATTCATAAGAGAATACATAATGGGGAGAAACCCTATGAATGTAATGACTGTGGGAAAGCCTTCAATGATCCTTCCTCTCTTAGACTGCATGTGAGAATTCACACTGGAGAAAAACCCTATGAATGTAACCAGTGTTTTCATGTTTTCCGCACTAGTTGTAACCTCAAAAGCCACAAGAGAATTCATACGAGGGAGAATCACCATGAATGTAATCAGTGTGGCAAGGCCTTCAGCACGAGGTCCTCCCTTACTGGGCACAATAGTATTCATACAGGAGAGAAGCCTTATGAATGCAATGACTGTGGGAAAACCTTTAGGAAGAGCTCATATCTGACACA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000030929-'3-11,'3-9,4-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.200 A=0.107 C2=0.054

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0)

Main Inclusion Isoform:

ENSBTAP00000041316