MmuEX6064136 @ mm10
Exon Skipping
Gene
ENSMUSG00000074500 | Zfp558
Description
zinc finger protein 558 [Source:MGI Symbol;Acc:MGI:1921681]
Coordinates
chr9:18456801-18459752:-
Coord C1 exon
chr9:18459657-18459752
Coord A exon
chr9:18457501-18457595
Coord C2 exon
chr9:18456801-18457052
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTAAATTTGTTTCAGATT
3' ss Score
9.96
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGCAGCACCTTGATAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGACAGAGGAATTATTCCAGGCATCCATCCAG
Seq A exon
ATTTGGAGAAGGTACTTAAAGCCAAATGGCTAACTCCTAAGAATCTTATTTTTAGTAAAGAACATGATAACGGTGGAAAAACAGTACAACTGGAG
Seq C2 exon
GAAAGAGGTCATCATGGAATGAAAGTCAATGAGTGCAATCAATGTTTTAAAGTCTTCAGCACAAAATCTAACCTTACTCAGCACAAGAGAATTCATACTGGAGAAAAACCATATGACTGTACCCAGTGTGGAAAATCCTTCCGCAGCAAATCTTATCTTACTGTTCACAGAAGAATCCATAATGGGGAAAAACCTTTTGAATGCAATCACTGTGGGAAAGCATTTAGCGATCCCTCATCCCTCAGACTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074500-'14-19,'14-17,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.188 C2=0.042
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCCAGGCATCCATCCAG
R:
AGATTTGCTGCGGAAGGATTT
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types