HsaINT0187646 @ hg38
Intron Retention
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:HGNC:28197]
Coordinates
chr19:9339193-9341184:+
Coord C1 exon
chr19:9339193-9339319
Coord A exon
chr19:9339320-9341101
Coord C2 exon
chr19:9341102-9341184
Length
1782 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTTTTTCATCTTATTTCAGATT
3' ss Score
10.73
Exon sequences
Seq C1 exon
GACTCAGTGACCTTTGAGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGACTTTGCTGGATCAAACTCAGAGAAACTTATACAGAGATGTGATGCTGGAGAACTATAAGAATCTAGTTGCAGTAG
Seq A exon
GTAAGGCTGGTACCATTCTTTTCATTTAGTTTTTTTCTGGAACAAATGTGTCTTAAGTAACTATGTTCTAGACTCTGCTTGTTAATGGGCTGCATTGGTAAACAGGCGAAACATTGTTTCCATCTCATAGACCTTACTGCCTTGTGATTTTTCTGATGAAATTGAAGATCTGTTCATTGTTCTAGCTTTATTTTCTCCATGGATAAAAGACTTAGAGCTTCTTGAATATGTGTATGAGCTTAAGCCTGGGTTTCATGGGAAGGATTGCTAGTCCTTTTGGTGAACAGTGAATGAGAAAAGAGTATTTGAAGTTTAGGTTCACTTGAAAGTTTTTGTCATGAACATTGTGTTGTAATTTAAGTTATATCTGAGAGGGTTCAGAATGCCCAGACAGCAAAATCTTAGCTCTTAACATGGAAGCATTTGTTATCCCTTGCACATTCTTTACTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCAGTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCTGGCTATTTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGGAACAGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCTTGACCTTGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTCGGATTACGGCATGAGCCACTGTGCCCAGCCATCCCTTGCACATTCTAACATCATTCATCTTTCCCTGAGACCAGGGTACTAGCTATGCAAACATAGTTTGACTTTTCAGGTGAAACAAGAAGAGTTAAAGACAGCGCAGAAAATTCTCCAAGATGAGAGAAAAGACAGATGTGATTATTTGTGAGAAACAGCCCTGATCTATGAGAGGTGCAGTCTGTTTATAAATATTAAGTAGGAAGGTTTTGAAAGTGTACTTTTTTGGGGAGAATATCAAGGCCAATTGGTTTCCAAGGTTCCTTGGGTACCTTAACTTCTCTTTCACTTTATCCATCTTGGAAACTTTCTTTTGCTCTGACATTAAGATCTGTCTCACTTCTCCTTTAAATTTATGATTTGCATTTAGCTCTGTATCCATTTCCTTTCAACTTTGTTTCCCTGGCTGTACCTCTTTTTTGTTCACTATAAAGTCTCAATGTTTAGAGAACCATTTCTTTTTTTTCTCTCTCTGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAGAGTCTTGCTCTATCGCCAGGCTGAAATGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCCTTCCGGGTTCAAGTGATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCTTGCCTGGCTAATTTTTTTTTTTTTTTTGTATTTTAGTAAAGATGGGGTTTCACCATATTGGCCAGGACTCAATCTCCTGACCTTGTGATCCACCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCAGCCTAGAGAACCGTTTCTTAGTGAATCACCTACCAACTTGACCTCAGTACCTTACTGTTGCTAGACTCTTACTACATCCAAATTTCTCAATTTATGTTTCCCGTTCTTTAAAAAAACAAACTATATTTCAAGCCAGTGTTTGAAACTACAGTACATACTAGTCTTGCATTTTTAACACCCTTTTTAAAATCATTATTTCTCTAAGAACTTAAAATTTTTTTCATCTTATTTCAG
Seq C2 exon
ATTGGGAGAGTCATATTAATACCAAATGGTCAGCACCTCAGCAGAATTTTTTGCAGGGGAAAACATCCAGTGTGGTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321:ENST00000317221:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCTTTGAGGATGTGGC
R:
CATTTCCACCACACTGGATGT
Band lengths:
206-1988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains