HsaINT0187646 @ hg19
Intron Retention
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:28197]
Coordinates
chr19:9449869-9451860:+
Coord C1 exon
chr19:9449869-9449995
Coord A exon
chr19:9449996-9451777
Coord C2 exon
chr19:9451778-9451860
Length
1782 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTTTTTCATCTTATTTCAGATT
3' ss Score
10.73
Exon sequences
Seq C1 exon
GACTCAGTGACCTTTGAGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGACTTTGCTGGATCAAACTCAGAGAAACTTATACAGAGATGTGATGCTGGAGAACTATAAGAATCTAGTTGCAGTAG
Seq A exon
GTAAGGCTGGTACCATTCTTTTCATTTAGTTTTTTTCTGGAACAAATGTGTCTTAAGTAACTATGTTCTAGACTCTGCTTGTTAATGGGCTGCATTGGTAAACAGGCGAAACATTGTTTCCATCTCATAGACCTTACTGCCTTGTGATTTTTCTGATGAAATTGAAGATCTGTTCATTGTTCTAGCTTTATTTTCTCCATGGATAAAAGACTTAGAGCTTCTTGAATATGTGTATGAGCTTAAGCCTGGGTTTCATGGGAAGGATTGCTAGTCCTTTTGGTGAACAGTGAATGAGAAAAGAGTATTTGAAGTTTAGGTTCACTTGAAAGTTTTTGTCATGAACATTGTGTTGTAATTTAAGTTATATCTGAGAGGGTTCAGAATGCCCAGACAGCAAAATCTTAGCTCTTAACATGGAAGCATTTGTTATCCCTTGCACATTCTTTACTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCAGTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCTGGCTATTTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGGAACAGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCTTGACCTTGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTCGGATTACGGCATGAGCCACTGTGCCCAGCCATCCCTTGCACATTCTAACATCATTCATCTTTCCCTGAGACCAGGGTACTAGCTATGCAAACATAGTTTGACTTTTCAGGTGAAACAAGAAGAGTTAAAGACAGCGCAGAAAATTCTCCAAGATGAGAGAAAAGACAGATGTGATTATTTGTGAGAAACAGCCCTGATCTATGAGAGGTGCAGTCTGTTTATAAATATTAAGTAGGAAGGTTTTGAAAGTGTACTTTTTTGGGGAGAATATCAAGGCCAATTGGTTTCCAAGGTTCCTTGGGTACCTTAACTTCTCTTTCACTTTATCCATCTTGGAAACTTTCTTTTGCTCTGACATTAAGATCTGTCTCACTTCTCCTTTAAATTTATGATTTGCATTTAGCTCTGTATCCATTTCCTTTCAACTTTGTTTCCCTGGCTGTACCTCTTTTTTGTTCACTATAAAGTCTCAATGTTTAGAGAACCATTTCTTTTTTTTCTCTCTCTGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAGAGTCTTGCTCTATCGCCAGGCTGAAATGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCCTTCCGGGTTCAAGTGATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCTTGCCTGGCTAATTTTTTTTTTTTTTTTGTATTTTAGTAAAGATGGGGTTTCACCATATTGGCCAGGACTCAATCTCCTGACCTTGTGATCCACCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCAGCCTAGAGAACCGTTTCTTAGTGAATCACCTACCAACTTGACCTCAGTACCTTACTGTTGCTAGACTCTTACTACATCCAAATTTCTCAATTTATGTTTCCCGTTCTTTAAAAAAACAAACTATATTTCAAGCCAGTGTTTGAAACTACAGTACATACTAGTCTTGCATTTTTAACACCCTTTTTAAAATCATTATTTCTCTAAGAACTTAAAATTTTTTTCATCTTATTTCAG
Seq C2 exon
ATTGGGAGAGTCATATTAATACCAAATGGTCAGCACCTCAGCAGAATTTTTTGCAGGGGAAAACATCCAGTGTGGTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321-ZNF559:NM_032497:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCTTTGAGGATGTGGC
R:
CATTTCCACCACACTGGATGT
Band lengths:
206-1988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)