HsaINT0187822 @ hg19
Intron Retention
Gene
ENSG00000198182 | ZNF607
Description
zinc finger protein 607 [Source:HGNC Symbol;Acc:28192]
Coordinates
chr19:38202511-38210089:-
Coord C1 exon
chr19:38209916-38210089
Coord A exon
chr19:38202594-38209915
Coord C2 exon
chr19:38202511-38202593
Length
7322 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AAGGTCTTCTCTTCTTTCAGGTC
3' ss Score
10.6
Exon sequences
Seq C1 exon
ATTGACCCTTGGCTCCAGGTTCCCTGCTGCTTCCTGTGCCTTCCTCAGCCTAGTACGACTACAACAGAGAAATGGTCCCAATGGGAAATCAGATACTGAGTCTTAGATGAAGATTTCCAGTGAGAAGAAACAGATAGGATGAGAAGCTTAGAAGAGTAATTGCCCTTAAGAAAG
Seq A exon
GTATGATAGATTCTGTTAAATAAAAAAGTATTCAGTGACACTTGTTAAAGCATGCAAAGAACCCTTTATTCAGGACCATGGTGGTAGGTATTGGGATCCCGGCTGTGAGATTTTGCAGTGGGTAACAGACATTGGGCTCAACTCCGAATTCAGCATGAACAAGTGGGAATTTATAGCCAAGAAGGTTAGGGATCACTGGATGAGAAATTACTAAGAGGAAATGTCTGGGTTAAGGAAGATTCTGACTAAACGCACCTAACAGGATTATTTCTGGAGAGAGAGACCTGGGGGACGGTGGAGGATGAAGATACGGAGGCGAAAGGGTCTTGCTAAACTGACTTAGAATAGTTCTTTGCTATAGCCAGATTTTACAGTGAAGTGTACAGATGGGCCTAGCTGAAGGTGTAGTAGCCTGACTAAAATTTGGTCTGGCAGGGTTTGTCAGTTTCGAGTGTAGGATTCCCTCCTGAAAAGGGTTGTTACTCCGCCCCCACCTCCCGGTTCTTGGAGTTTCATTTACATGTTTAACAAACACGGCCTTGAATTCTGACCCCAAGAACCTGCAGTGAAGGATGATTGCAGGTTCCATCCAACATACTTCCTTCTGGTCGTGTGTATGAAATTACGCGCCTGCAGCCTTGGAGGGGGGAAACATAAGCGCTAAGTATTATGAGGCAATTTTGGATATTCCGTTTTGGATTTCTGTAGATCAAAAGCAACAAGAATATGAACTTAGCCGTGATGTGAAGGAAGTGAGCCAGAATTTAAGTTTTCCAAAATAGGAATTCTCGGTCATTGGTGTACTGTCTGTAGACCAATGCCCTTATGGGCATAAGGGACATCACAAACCCCCTGAAATTCTATAAAGAATTCCTGTACATGTTTGTTAATTTGCATTTTTCTAGGATGTCCATAATCCAAATTATTTAGACTCAGGTTTTAGATCTGGAATCAAAGAGTTTTATACCTTTGAATGGTTTTGCAGAAAACTAATGAACGAGATTATGGGAATGGTTAAGAAAATTATACAGCGTCCAAGGGATTGGATATTATACAAATAATAAGATTTATGTTTGTAAAGAATCTGTCACAGGATAAATAGCTGTGATCTAATGTTTAACACTATTTAGAGTTACAGTGGTGGATCACAGTTCTCAAACTATATATGCAACTCTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACTGAGTTCCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCTGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCACCTGAGTAGCTGAGATTACAAGCATGGGCCACCATGCCTGGCTATTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTGGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCACGCCCAGCCGCAGCTCATTTTTTAAAAATGGAATTTTGGGCCTGGCACAGTGGCTTCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTAGTCGGGAGACTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCGGACCTTGCAGTGAGCCGAGATCGAGCCACTGCACGCCAGCCTGGGCGACAGCGCGAGACTCCGTCTCAAAAAAATAAAATTTAAAATTAAAATTAAACAAAGGGAATTTTGCAAAAACTTTTGCAAGGATTGTATCCAAAATGATTATTTAATTGGTTTTTCAGAGAGGAATGAAAGGGTTGTGGCTACATTTACTGAGCATATAATGTGTGCCCCAAATTATTGGACCTATTTTGTGTACCTGTTCCCATTAGATGTGCAGAAGCCATTTCCCTGTCCACTAAGGAAAGAATCTTTATAGTGAATTGTTTCTAGTTATGTAGAAGAAACACAGCTAAAGGCTGTTCAAGAAGACAAAGAGTTACATGTTTTAGTCACGCTGATTTTTCATTCTAGGCCTAATATTTAGATTTCTTTTAATGACACATGTACCCTCTCCCCATAAGGATACTTTTAGAAATAGTTTATTACTACTTTGAAATATCTTGAAGTTATATTTATGATGATGGAATTAAGGCAGTTTCGTCACAAAAATTTCACTCCCTAAGATAGTTTCAAAGAAGAAATTTAGAATAACCCAAACCTCCCTGCCCAGAGAGAATCACTTTACAAATTTGGGTGTATATGTTTTCAGTTTTCATGTGTGAGCACTTGTGTGTGGTTTTGTCTTTACAGAAGAGAATTAATGAAATAGACAGACTCCTACTTTTAGTTAGAAAAAGGAATCTAACCCAACCATGGATATAAAACCAGTATGATGAGACACCATTACTTTGGACTGAGCTTCTGCACTAGGCTCCAACAGACCAGACTAAACCAAAATGAAGTCACTCATGCTAAAAGCCACATTACAAAACTGAAACTTTAAGGGAGCAGGTAGAGTTCCAAACAGATCAGTTTTTCCTGAAAACAGGAGACTCCAGTCTACCTGAGTCAGCATAATAAGGAAATGACCTCCGCTTAACCTTCCAGAAAAAAGTAAACTGAAGTAGCCTGATAGTCACCAATCAATTTTTTTTTCTATAGTTCTCTTATTTGTTTCCACCTTACAAAATCCACTGTTTCTCCATTGCTCAGTAGGAGCTCTTACGCTATTTTGTACAATGGAGGCTACCCCTTTCATGAATCACAAAGCCCATTAGATCTGTAAGTCAATGTGTTGCAACTAGGTCTTTTGACATGGGCTTTCATATATCTCTGCATTTTAAGAGGAGAGGGAGCTACCAGGGACCTCCTTCAGAGGTGAAAAACAATCCAAGTTTTTATACCTTTTAGGTATTAAAAATGCGATTTAAAACTTAACAGGGCACAAATGATGAAGACATCCTCTCAGAATTAGTAGTTTAGAAATGCAAAGTTACTGCAGAGAAAAGCATGGTAATCTATGATTTCCAGATGTCTTGCAAGTATGGTAATATTTCCAAAGATAGTTCAGTAATAATAACAAATAGGTATTGTGATATTTACAAATACTCACATAAATGTTTGTATTTGGCAGGAAAATAAGATTCACTCTCCTTAATATTCTTGACCTAGCACTTTATTAGATCCAGTTCTTTGAATGTATGTGAGGCTGAGTGGTATCTTCCTTGTTTTCTGTACCTGCTGGGGAGTAAGGAAAGGGGCATTTTCTCCTTACTTATCTGATCATCTTTTTTTTTTTTTTTAGATGGAGTTTCATTCTGTGGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAGCAATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCATCACCATGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGGTCAGGCTGGTCTTGAACTCAGATGATCCGCCCGCCTCAGCCTCCTGTAGTGCTGGGATTACAGGCGTGAGCCACCACACCCAGCCAAAAAAAACCTAATTTTTTTTTTTAAAGAAGACTTGTATTTTCTTAAAGGTGGGCCATGAAATTTGTAAATTCGGAATTATGAGTAGGAGAAAGCCCATGAAGCACAAACTTTAAGAAACAGAAAGTGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACTAAGTCAGGAGTTCTAGACCAGCCTGGTCAACATAGTGAAAGCCCATCTCTTCTAAAAGTACAAAAAATTAGCCGGGCATGGTGGCACACGCCTGTAGTTCCAGCTACTCGGAGAGCTGAGGCAGGAGAATAGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAACGCGACTCCATTTCAAAAAAAGAAAGAAAGAAAGAAAAACAGGAAGCAACAGAATTAAGTTCCTTTTATAATAACGGATTAATGAGCATGTGGTATTTTTTAACATTTGATGATAATGTTATTACAGTAGCTATCATATTTTACTTTTTTCGTGTTTCTATAGATCATCTTGATTAATCTTCAGAACTGTCTCGTTAAGTAGGATATATTCCTATCCCTTATTTGCTGATGGGGAAACAGGCATTCATATGTTAGCATCTCTCATAAGGCAAAACTCAGTATCACTTTTGAGAGTGAGAAGACAGCCTGTCTTCTTAATTTCAGCAGGATACCACGTAACTAATTTTTGCATACTTTTTTTTTTTTTTTTTTTTTGAGATGGGGTCTCACTCTGCCATCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCGGTCTCCTGGTTCAAGCGAATCTGGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCGCCACCATGCCCAGCTAATTTTTTTTAAAATTATTTTTACTGGAGACAGGGTGAGTATGTTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGAGACGGAGTCTTGCTCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTGGCTGGGACTACAGGCGCCCGCCACCACGCCTGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTGGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCGACTGGGTGCATACGTTTTTAAACCTGTCTTATTTACTAACTCATCCTTGGTACTATTTTCCTTTGATTATATGATTTAAGATCAATCTTAGTAATCATGGCATAGGATGTTACCATAGTCCGGAGAATAATATGTTTAACCTACTCCCTATTGTGCTTTTAATATTTGTGTTTTTAATTTCGATAATCAAAAATTATCTTTGATGAATGTATTGTACGTATTGGTTGTGTACTTCTATCGTTATTTCCTTTTTAAAAATTCTTACAAGTGTACCTGTGAATTTTGTGGTAAAAAAGACTTTTGGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTGTGGGAGGCTGAGGCTGGCAGATCACGAGGTCAAGAGTTTGAGACCAGCCTGGCCAACATGGTGATAACCCCATCTCTACTAAAAATACAAAAATTAGGTGGGTATGGTGGCAGGTGCCTGTAATCCCAGCTAGCTACTTGGGAGGCTGAGGCAGGAGAACCACTTGAAACCAGAAGGCGGAGTTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAAAAGAGTAAAACTTTGCCTCAAAAAAAAAAAAAAAATCAGACTTTTATTAAGTGCTTCTACTACGCCACACCTGAAAATTGCAGTATTTGAAATGGGACAATCACTGAAAAGATGAGTTGCTTCCTCTGAAATACTTTTACAGTCTATGAAGGAAAGTCAAATCTGAATAGGAGGAAGTTTAAGGCAGTGTGTGATAGAGTCTGTTTGGAGAGATTTAGGTGAACTACTTGGTGATGTCACGTAACAGAGACATCAGTCTGAGTATAGCAATAGTCAGGCTATGAACAAATTACACTGAGTCTATGGGCTATGTATGGTGATAAACAGGTTTTATACTACATCTTTTAAACCTTGTAGTTTTCACTGTAATGATACTAGATAGAAAGCAAAATTAATTGCATGAGGAAATTCAGCAGCTATCTAGAGGATATCCTGACCTACCTGCCAGATTTAGGAACGAAATAAACCCTTCTGTTAAGAAGACCTGAAATAAAGCTGTATTGAGACCATCATCCATTCACAGAGGAGATTTCTCAGGGACAGTTCCCCATGTTGTTGGAGACACAATTCTAACATATCTGAGAACCGGTGATGAAGTGAGTTTAGGTTTGGGGACCCAAAGGAACCCACAGAAGATAAGCCATTCAGTAAGATGATTTTAAATTTAGAGAAAAAATAATTTTGTTGAAATTCCCACCTTAACAAATTGGAAACACATACATGTTTCAAGTTAATATGTCCGTGCTTACAATAATCGTGAAGGAAGTATTAATAATGAAAAAATCAAGAGCCACACAAAAGTATAGGGAATGCTATTTATCAAACTCTGATTATGGGAAGTTGCTAAGCAAAGGTTTATTTACTTTTCCTTTAGTTTTATTTAGTTGTTTCATGTATTCAGCCAAAATGGAATACATAGTGAGATATAAGCACTATGACTATAAGCACTTTTTTGTTTCTTGGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTTCAGTAGCACAATCATGGCTCACTGCAACCTTGAACTCCTGGGCTCAAGTGATCCTCTCGCCTCAGCCTCCTGGGTAGCTGGGACTACAGGTGCATGCCACCTTGCCTATTTTATGATTATCTGTCTGCCAGCCTTTCTCTCTGTATTGATGGATATGTATTTATATATTTTACAAAAATAAATGTATTGGTCAGTCTGATCTTTATGTTGACATTGTTTCTGATATTTTTCATGTCCTTGAATTTTTCTCAATTTCACATTTAATGACTAGTTTGTATTCTAGGACAGTGATAGTCTGTTATATATTTAACTAGGAAGCTTTGCTAGACTTAGAATGCTGAACACTCGCCATCTGTCTCCAATATCTTGACCAATTTCCCCAGTTTCAAGACTAAAAAGAGGTTCTGGTATGGATGATGTTCCCTGTTTTTACCCTTAAAGGAGGGAATGGAAAGAGGTAGTTCTGCTCAAAGCAGGACAGGGCTGCCTAATCTGAGGTCCCCATCTGCCTCACCAACATCGTACATTGGCCAGAAAATTTCCTACTGAATTATCTGGGTCTGGTTTCCATGACAGTATGTTTCTAATGTATGACTCTGTGTAGGTGAGGCCCTTGGGTAGTGGGGGAGGAAATGGGTTTATCCAGAATCTTAATCTTCCCAAATTGTATGTGAGAGGAGGTAGTTTGTAACTTGGAATGGAAGAGGAAAACAGTACTATTACCTTGAGTCCTATGGGGACCACTAAAGCACAGCTGGTCTCAAGGTCTTCTCTTCTTTCAG
Seq C2 exon
GTCTTGGTTCTTTTGACTTTGCTCTTCTGGTAGAGAAACGCCAAGGACTGATCAACTCTTGCCAGTCTCAAACCATGTCCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198182-ZNF607:NM_001172677:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)