HsaINT0188043 @ hg19
Intron Retention
Gene
ENSG00000197497 | ZNF665
Description
zinc finger protein 665 [Source:HGNC Symbol;Acc:25885]
Coordinates
chr19:53666552-53678824:-
Coord C1 exon
chr19:53678698-53678824
Coord A exon
chr19:53669601-53678697
Coord C2 exon
chr19:53666552-53669600
Length
9097 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGGTTGTTTATATCTTACAGATA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GGACAGTTGACATTCAAGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGACATGCCTGGACCCTGCTCAGAAGACTTTGTACAGGGACGTCATGTTGGAGAATTATAGGAACCTGGTCTCCCTGG
Seq A exon
GTGAGGATGACTTTCTTTTAGAAGTCAGGGTCTGTTCTCGTGTATGTTTTCATTTTCCCTTGTGAGTCTCTTGAGAGCCCCTGCATTGCTTGATGAGGATTGATGTCCTGTTGACTCATAAATGAAAAGCCTAATCATGCAGGATCTGGACTTTAATCTTGCTGTTTCTCGAGATGGTCTGCCCACTTTGTGGAGAGTTTTAGAGTTTTGTATGCATAATACCTTGTACCAGACTTTTAAAATGTTTGATTTTCTGTTTTCTACTTCTGTGCTTTTGATTGAGTGGTTCATGGAAGAAAGCTAGATATCTGCGTAGTGTGGTGTTTCCTAACCACTCAGGAGGCATTCCGTGGATCAACTGTTGAAATGTTTTTCCAAATCCGTCTACAGTTTCCTCTCTTCTCATGTAAACCTAAGGGTACGATTCTGGAAAAGCCACAGCACATTATATTTCTTTTTTTTTTTCTTTCTTTCTTTTCTTTCTTTTTTTTTTTTTTTTGAGACGGAGTTTCACCCTTGTCACCCAGGCTGGAGTGCAATGGCACGATCTCGGATCACTGCAACCGCAACTACCGCCTCCTGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCTTTAGCCACCATGCCGAGCTAATTTTTGTATTTTTAATAGAGACAAGGTTTCACCATGTTGGCCAGGCTAGTCCCGAACTCCTGACCTCAGGTGATCTGCCCAACTCAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCTTCTTTCTTCTCATAAGCAGGAATCTCTCCTTTTGATCTGAGTATTATCTCCTTGTTGGAACAAGGGAAGGAGCCCTGGAATGTGGAGAACCAAGAGACAATAGAAACTGGGAGTGGATCAGAGGTGGGATCACAGGTCAGAGTTCAGATGGGCAGGGAGAAAGCATCTCATTAGACAGTGTTTGAGAAACACCCTGCAAATGGGAGAGTTTTTTGGGAAAATAAAAGTTTATATCCTGTGATCACTGATAAGAATTTTTTTCCCTACCACTTAATACCCTGTTCTTTAGATGTGTAAAACTTCATCCTTCCAACCTGCAGTGGCGCTACAGCCCAAAGAGCAACACATGCAAAGTCTTGGTCATGATCTACAACCGTCTGTTACTGGCTTTCTATGAACTCTTAGTCCCTTTCAAAAGGGTTGCTCTCCTCCTTAGTCTCTCCTTCTGTGCTTGATTCAATCAAAAATCCTTATTTTTCTGTCCACAGAGACAGATGTGAGGACTCCATAGTTTTGGCAAGTGCCTCTATCCATACTTTATCCCATTTCATGAGCTTGGAAGACCTACTTCCAAGAGATGGAAAACACTGGCTGCTTCTCCTTTGCACCTGGGGCCCCGGAAACTTCACGGAACTGTCTTAAGCTTTCCTTGCCTGTTGAGGTCTCAGCTACTTCTTCTCTTCCACTTTGTGACAGTTTGTGGGTGTGGGTGACAAGGGGAGTGGGTTGGATCTTCTGAGATGGTTAGCCAAATTGTTAAGTACAGTGGACAGAAATGTCCTCTCTTTGATCCCAGTCCTACATCGGGCATGTATCCTGTTTTTTTCACACTTGAGCATGGGATTCATTGAACAAAACAAACCTGGAGGCATCACACTACCTTACTTCAAACTGTATTATGAAGATATAGTAATTAAAACAGGATAGTACTTCCTTAAAAATAGACACATCAACCAGTGGAACAGAATAAAAAGAGTAAAAAATGCTAGATGCGGTGGCTTTCCCCTGTAATCCCAGCAGTTTGGGAGGCTGAGGTGGGTGGATCACGAGCTCAGGAGTTTGAGACCAGCCTGTCCAATATGGTGAAATGCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTGCACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGCGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTGAAAAAAAAAATGATGGATATATGGCCAGTTGCCTTTTGACAGAGGTACCAAGAACACACAATTAAAACAAGGACAGTTTTTTCAATAAGTATTGCTAGAAAAAAGCAATATCCACACACAGGAGAATGAAATGGATGTTAATCTCACACCAGATACCAAAATTGATTCAAAATGTATTAAATACTTAAACGTAAGACCTGATAATGTAAAACTACTAGAAGTAATCATAGGGGAAAACCTACATGACGTTATCAATGATTTTTTGGCCTTGAGCCCAGAAGCTTGTGCAACAAAAGCAAACAGATAAATGGGGTAGCATCTACTGAAAATGCTTCTGCACTGCAAAGGGAACAATTAACATAATGAAGAGACAACCTACGGATTGTGAGAAAGTATTTGCAATTTGTATATTTGACACCAATTTAATGTCCAAAATGTGTGAGAAATCGAAACTACTCAATAGCATGAAAACAAACCAATTTAAAAAATGGCCAAGGGATCTCAATATACATTTTATTTCCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAATCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAATCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGCACCACCACGCCTGACTAATTTTTGCGTTTTTGGTAGAGACAGGGTTTCACCACATTGGCCAGGCTGGTCTCAAACCCCTGGTCTCACATGATCCATCCACCTTGGCCTCCCAAAGTGCTGAGATTACAGGTATGAGCCTCAATATACAGTTCTTGAAGGAAGGCAGACAAACAGCCAACATCACTACTTGCAGAGATAAAAATTTAAAGCAGCATAAAATATCACGTAGTTGTCAGAATGGCTACTGTCAGGAGGACAAAAGATATGTGTTAGCAAAGATATGGAGACTGGGGGTTCTCATACACTATTGGTTGAATGTAAATTAGTCCAGGCATTATGAAAAATTATGTGGAAATTTCTCAAAAAAATAAAAATAAAAGTACTATATTATCCAGCAATCCCACTTCTGGGTATACAGTTGGCCCTTGAACAGCACAGGTTTGAATTCCATGGGTCATCTTATATATGGGTTTTATTCCAGTAAATATATTGGAAATTTTTAAAGACATTTCCAACAATTTGAAAAAGCAGACAAATTGCATAACCTAAAAATATTATAAAAATTAAGAAAAAATTAGGTATGTCATGAATGCATAAATTATTACTCTATTATTTACCACCATAAAAAATACACAAATCTGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGTGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCTGGCCAACATGGTGAAACCCTGTTTCTACTAAACATACAAAAAGTAGCTGGGTGTGGTGGCACATGCCTGTAATCCCAGCTAGGTGGGAGGCAGAGGCTGGAGAATCACTTGAACCAGGGAAACAGAAGTTGCAGTGAGCCGAGATCACACCACTGCCCTCTAGCTTGGGCATCAGAATGAGACTCTCTTTCAAAATAAAAACACAAATCTATCATAAAAAATTAAAACTTATACACACACTTACTGCATGTGACATACAGTACAAAAATCAGCTGGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAGAATTGTTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAAATCACGCCACTGCACTCCAGCCTGGGTGACACAGTGAGACTCCGTCTAAAAAAAGAAAAAAAAAAAAAAAATATATATATATATATATATACACACACACACACACAAATGTAAAGATATAATAATCATAATTGTATAGAACTAATTTTAGTACATAGTGTACTGCCATACAATTTCATAGCCACCTCCTATTGCTATTACATGGAGCTCAAGTGTTGCAAGTATTTGCTTAATACACTCTGTAACGCTAATCATCTTTAAGTAGTTCATCTCTCCAGTAAATTGCATATCATAATAAAAAGTGATCTCTTGCCGCATGCGGTGGCTCAAGCCTGTAATCCCAGCATTTTGGGAGGCCAAGGTAGGCAGATCATGTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGCTGGGCCTAATGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAAAATTGCTTCAACCCGGGAGGTGGAGGTTGCAGTGAGGTGAGATTGTGCCACTGCACTCCAGCCTGGTGACAGAGCAAGACTCCGTCTCGAAAACAAACAAACAAACAAACAAAAAAGGAATACAGTATATAATACATATAACATAAAAAATACAAGATACATTCTAATCGACATTATATGTTTATTAGTAAAGCTTCCAGTCAATCGTAGGCTATTAGTGGTTAAGTTTTTGGGGAGTCAAAAGTTATACACAGATTTTCAACTGAGTGGAGGGTTGGCATTCTTAACCCCTACATTGTCCAAGGGTCAAGTATAGATCCAAAGGATTTAAATCAGCATATCTATGACGTATCTGCATTCCATGTTTAATGCAGCATTGTTCACAATAGTCGAGTTATGAAATCAAACTACGTGTTCATTAACAGATGAATGGATAAAGAAAATGATGGAACACTGTGTAGCCTTTAAAAGAAGGAAGTTCTGTCTGCCAGAACATGGATGGACCCCGAGGATATTTTGCTAAATGAAATAATCTAGGCACAGAAATACAAGTACTGCACCTTCTTACCTATATGTGGAATCCAAACCTCTTGAACTCATAGAAAGAAGAACGTTGGTTACAAGAGGGTGGGGTTGGGGAGATTAGGAAGATGTTTGTCGTTTCAACACAAAGGTTCAATTAAACAAGAGTAAATGACACATTTTTCACATGATGGATGTGGTAATAAGCGTGATTCCATCATTCCACATTCTATATATGCATCATGACATCATTTTTTCCCCATAAATATATACACCTGTAGTTTGCCATTATACAATAAAAGTTTTTTTTAAAAAAGTTATATTCCATTCCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTTTATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACACGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATAAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAAGGGGGAGGGATAGGCTTTAGGAGATACACCTAATGCTAAATGACAAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTATGCACATGTACCCTAAAACTTAAAGTATAGTAATAATAATAAAAAAAGAAATATTTCCATTAAAAAAATTTTTTTTAAAGCCATCCAACCTATTTTCCAAAGTGGTTGTAGCCTTTTACATTCCCACTACCAGTGTGTGAGAATTTTAGTTTTTTCACATCCTTGTTAACACTTGGTATTGCTAGTTTTAAATTCCAGCCTTTCTAATCAACATTTAGTAGTTTAATTTGTATTTTCCTAATGACTATGATGTTGAATATCTTTTAATGTGCTTATTATCTATATATATTAATATTTTCTTTTGTGCAGTGTATGTTCAAATCATTTTCCAATGTTTAAAATTGGGCTTTTTGTTTTCTTAATATTGAACTTTGAGAGTTCTTTGTATATTCCAGATACAAAGTCTTTATCAGATTTGTGCTTTGTGAATATTTTCCCTCAGTCCGAGTCTTCATTCTTTTAACAGTGTGTCTTTATAAATTAATTCTTTTTTTTCTTTTATGGATCATGATTGTGGTATCATATCTAGGAAATCTTTGCTTGATCCGAGGGCTCCACAGATTTTTCCTCATGTTGGTTTTCTAAAAGTTTTATGGTTTAGATTTTACATTAGGTTTTCATCTGATCTATTTGAGTATATTTTTCTATATGGAATGAGGTATAAACAAAAGGGTTTTTTTGCATATGAAGATCTAATTGTTTCAGCACCATTTTTTAAAAAGACTGTCTTTTCTCCATGGAATTGCCATTTATTCTTTGTCAAAAATCAGTTGTCTATATAACGTGAGTCTATTTCAGTATTCTCTATTTCATTCCATTGATCTATTTGATATTTGTCTAATCAACAATAATCACACTGTCTTGATGACTACACTTTTATAATGAAAGCAGGTAGTGATAGTGTTACAACTTTCTTCTTTATCAAAATTGTTTTAATTATGCTAGATCCTTTCCATTTTCCTATGAATTTTAGAAAGCCTGTTAATTTCTCAAAAAATACATGCTGGAATTTTGGTTGGGATTGTGTTGAATCAATAGGCTAAATGGGGAGTGTTGCTGTTTTAACAATATTGAGTCTTCTAAATGCTGAACAAGATATATTTAGCTTTTCATTTATTTAGGTCTTCTTTAATTCCTCTCTGCAATATTTTATAGTTTTTAGTGTATAGGTTCTTCATATCTGCTGTCGGACTTTTCTCTAAGTATTTAATGTTTTTAAAGCTATTGCAAACTGCATTTTAGAAAACTTTCTGATTATTCATTGCTAGTATATAGAAATAAAATTGATTCTTTGGGGTATTGATAATGTATTCTTCAACCTTGCTAAACTCACTAGTTCTAGCAGCATTTTTGTAGAGTATATTGAATTTTCTCAAGGATGATTATGTTATCTGCAAATAAAGACAGTTTTATTTCATAAAAAAAAATTATATTCCAGTTCTTATATCCTGTGCTGGTTCTGAAGTAGAACTCCTCTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGGGAGTCAGGCTGTGTCGCCCAGGCTGGAGTGCAATGGCACAATCTCGGCTCACTGCAAGCTCCACCTCCTGGATTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGCCCGCCACAACGCATGGCGAATTTTTTGTATCTTTAGTAGAGACGGGGTTTCATCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGGGAGCCACCGGCGCCCGGCAGACTCCTCTTTTCTCAAGAGAAATTGTTGGCCAAGCACCCTGGCTTACGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGGGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCCTGGGTGACAAAGCGAGACTCTGTCTCCAAAAAAAAAGAGAGAGAAATTGTTGACAATCCACAGACTATAACTTCCTGTAAACACGGTTACTAATTCTTGCCTACTGCTTATATCCTGAGTTGCTAAAATATTTTCTTAATTTCGATTATTATTGATAGAGGATGGTTTTTTACCATTTGTAAGAAATACAACTGTTGGGGCTGGGCGCAGTGGCTCACTCCTGTAATACCAGCACTTTGGGAGGCTGAGGCGGGGGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGTCTGGCCTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCGGTGAGCCGAGATTGCACCACTCACTCCAGCCTGGGCAACAAGAGCAAAAGTCCTTCTCAAAAAAAAGAAAGAAAGAAAGAAAGAAATATAACTGTTATATACCACTTGTTAATGTTGCAAAATGTTTGCTCTGTGTGGGTATATAGGGGTATGTAGTTTTATAACAGGTATTCAGAAAAATAGTTTTTTCTGACATTTTAAAATTGAATTCCTCCTCGTTTTTTCAGTGCTATTATTGTTTTCCAATTCAAAATTACTAGTTCTTTAATTATTCATTACATATGTTTGCTGTGAGTTATTTGCCATTAGAGTATATCATGTTGTGCTTCAGCATTTACTTATGCATAACAAATATGCTTTAAATAGGCACAATCTAAGAATTATTTCTCTTGAATTCTGTGACAGCCATATAAAATATACTGCCAATTGGTAGCCTTGGGTCATGGTTGAAAAATACTCCTTTCAGGGCTAATATGGGTTTGCACAATATGAGTGTTTTGTTCACAGAATGTTTAAAACTAGGATCCCCTACTATTTGAATTACATGTTACCACCTTTTCTTTGATAAGGAATCCTGTTCCTTTTGTGTTCTGGAAAATTATGGTTCTGAAGAATCGTAAGTCTGTTCAACATAACTATTACTTTTGGTGTAACATTAGGTTTTTCAATGGGAAATAGTTATTTACCTACTATAGTTAACTGGAAATCTATGGTTGTTTATATCTTACAG
Seq C2 exon
ATATCTCTTGTAAATGTGTAAACACGGATTTGCCACCAAAGGGGAAGAACAATATGGGAGAAGCGTTCTACACGGTGAAGTTGGAGAGACTTGAAAGCTGTGACACTGTAGGCTTGTCCTTCCAGGAAGTTCAGAAAAATACATACGACTTTGAGTGTCAGTGGAAAGATGATGAAGGAAATTATAAAACAGTACTTATGTTGCAAAAAGAAAATCTCCCTGGTAGAAGAGCTCAACGTGATAGAAGGGCTGCAGGAAACAGGCATATTGAAAATCAGCTTGGAGTAAGCTTTCAGTCACATCTCCCTGAACTGCAGCAATTTCAACATGAAGGGAAAATTTATGAATACAATCAAGTTGAGAAGTCTCCTAATAATCGAGGAAAACATTATAAATGTGATGAATGTGGCAAGGTCTTCAGTCAAAACTCACGGCTAACAAGTCATAAGAGAATTCATACTGGAGAGAAGCCTTACCAGTGTAATAAGTGTGGCAAAGCCTTTACTGTTCGTTCAAACCTAACAATCCATCAGGTCATCCATACTGGAGAAAAACCTTACAAATGTAATGAATGTGGAAAGGTCTTCAGTCAACCTTCAAACCTTGCAGGTCATCAGAGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGAGCACATTCAAAACTAACTACACATCAGGTCATCCATACTGGAGAAAAACCTTACAAATGTAAGGAATGTGGCAAGTGCTTCACTCAAAATTCACACCTTGCAAGTCATCGAAGAATTCATACTGGGGAGAAGCCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGTTCGCTCAAGCCTGACTACCCATCAGACAATCCACACTGGAGAAAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTCAGGCACAATTCATACCTTGCAAAGCATCGGCGAATTCATACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGGAAAGCCTTCAGTATGCATTCAAACTTAACTAAGCATCAGATCATCCATACCGGAGAAAAGCCTTTCAAATGTAATGAATGCGTCAAGGTTTTCACTCAGTATTCACACTTAGCAAATCATCGAAGAATTCATACTGGAGAGAAACCTTACAGGTGTGATGAGTGTGGCAAAGCCTTTAGTGTGCGATCAAGCCTAACTACCCATCAGGCAATTCATACTGGAGAAAAGCCTTACAAATGTAATGACTGCGGTAAGGTCTTCACACAAAATTCACACCTTGCAAGTCATCGGGGAATTCATTCTGGAGAGAAACCTTACAAGTGTGATGAATGTGGTAAAGCCTTCAGTCAAACATCACAACTTGCAAGGCATTGGAGAGTTCATACTGGAGAAAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGTTCATTCAAGCCTAACTATACATCAGACAATACATACTGGACAAAAACCATACAAATGTAATGATTGCGGCAAGGTCTTCAGACACAATTCGTACCTTGCAATTCATCAGAGAATTCACACTGGTGAGAAACCTTATAAGTGTAATGAGTGCGGCAAAGCATTTAGTGTACATTCAAACCTAGCTACCCATCAGGTCATCCATACTGGAGAAAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTCACTCAAAATTCACATCTTGCAAATCATAGAAGAATTCACACTGGAGAAAAACCTTATAGGTGTAATGAGTGTGGGAAAGCCTTCAGTGTTCGTTCAACCCTAACTACCCATATGGCAGTCCATACTGGAGACAAACCTTACAAATGTAACCAATGTGGCAAGGTCTTTACTCAAAATTCAAACCTTGCAAAACATCGAAGAATTCATAGTGGATAGAAACCTTACAAAGGACGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGGGGATCACCTGAGGTCTCGAGTTCGAGACCAGGCTGGCCAACACGGTGAAACGCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGCACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCGAGATCATGCCATTGCACTCCAGCCTGGGCAACAGGAGTGAAACTCCATCTCCAAAAAAAAAAAAAAAAAAAAAGTAACCTTACAAAGGAGTGCGGCCAGTTTTTCAGCCACAAATTCTTTCACAACATCAGAGAATTCATTCTTGAGACAATTCTTACAAATACAGTGACTGTGGCAAACTCCTGATGAGTTTAAGCATTAACAGACATCAGAGTTCAAATCCTGTGAATATACTATGTATGACAGAAGCTTTATCCAGGTCTCAGAGCTCAATACGCATCAAAAGATACATCTTTGATGAAGTCACACAAACGTAACATGCATGCTGAGACTATTACTCCTGGACCACAACTGTAGGTGAGGATTCATAGGAAGAGTAGAACTCAGTCTCTAGTTTCCTCATAACCCTCTGATATTATATACTTCAGCATAATCAGAAGTCCAAATGTGTTAAAACTCATTACATGATACATATCAAAGGTTGTAGGATGTTTGGAAATGGCCAATTACTTTCAGCTTATAAAATGTTTTGTTGAAGTATTTAAGATTTATTGAAAAGGCTACTATTTATAACTTCCAACCAGAACTTTGCAATGTGCTGATTTTATACATGATTATACGCCTAACATGGTGTTGTTCGGGAAAGAATCAAAGGATGGAAGGGCTCACTCACTTCATTAGGTGAGGATTATTTCTCTCCAAGCTCCTGAAGAAAAAAGACTCTGCCTTTTAAAATTAAATATAGTCTGAATTAGAGAGCACTTGGAAAGGGCAGAGGATGATGAACTATGATGTCACTCATCATCCTTATTGCACTGCAGGTGCCCTTCTTCTGACAGAAGAGCACTGTGGGTATGGGAAGAAATTCTCTACTGGCCGGGCACAGTGGCTCACGCCTGTAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197497-ZNF665:NM_024733:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF079757=C1_4=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF097235=Zn-ribbon_8=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)