HsaINT0188196 @ hg19
Intron Retention
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:27815]
Coordinates
chr8:144773243-144773883:+
Coord C1 exon
chr8:144773243-144773369
Coord A exon
chr8:144773370-144773769
Coord C2 exon
chr8:144773770-144773883
Length
400 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTTTTCTCTCCTTTGAGAAGGAT
3' ss Score
4.99
Exon sequences
Seq C1 exon
GAGCCAGTGACCTTCAGGGACGTGGCCATCTACTTCTCAAGGGAGGAGTGGGCGTGTCTGGAACCCAGCCAGAGGGCCCTCTACCGGGACGTGATGCTGGACAACTTCAGCAGTGTGGCTGCTCTGG
Seq A exon
GTGAGCACGGGCTGAGCGCAGCGTGAGCACAGGGTGAGTGCTGGGAGAGCTCTGCCGCTGCCTCTGGGCCCAGCTCGTCCAGGACAGTAGTGGGGCCTCCCAGCTGAGGGGGCTCAGGAGCTAGAAGTTATTGGCTTATGTAGACAGAGGGGCCCACTCAGCGTTTCTCTCGGGCTCCCTGGAGGCAGCCTCATCTTCCTTCCTCTGACCTTGCCAGGGCCTTCCGTGGGCCTTGGTGTCCAGGCCCCTCCCTTCCTGTCATCTCTGCTTTGGGGTGGCTTCTCCAGGGCCTCCCGAGGGCTGGCCTGGCGTCTTAGGCTGATGCACAACTGCTCTGAGCCTCGACCCTCACTTTGTCCTCAGTACAAGTAAAACAGAAACTTTTCTCTCCTTTGAGAAG
Seq C2 exon
GATTTTGCAGCCCCAGACCAGACCTCGTCTCTCGCCTGGAACAGTGGGAGGAGCCGTGGGTTGAAGACCGGGAGAGACCTGAGTTCCAGGCAGTGCAGAGGGGACCCCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135-ZNF707:NM_001100598:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.362
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGTGACCTTCAGGGA
R:
TCCCCTCTGCACTGCCTG
Band lengths:
231-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)