MmuINT0179755 @ mm10
Intron Retention
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75973123-75973655:+
Coord C1 exon
chr15:75973123-75973208
Coord A exon
chr15:75973209-75973541
Coord C2 exon
chr15:75973542-75973655
Length
333 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTCTCCCTTTTGGAAAGGAT
3' ss Score
5.49
Exon sequences
Seq C1 exon
GGAAGAATGGGAGTGTCTCAGTCCTAGCCAGAGGACCCTTTACCGGAATGTGATGCTGGAGAACTTCAGGAACTTGAATGAACTGG
Seq A exon
GTAAGGGCTGCATGTTAGTGTCAGGAGCTTGGTGGGTCCTGGTTAAAGACTCCTGTTGCTGTGTCCAATCTTGTCTGACTCCCCTGGGGTAGCCTGCCTTTTTTCCTCAAACCCTTGGGGCCCCGCGGGGCTTCTGTCAATACGTGTGTGTTTACATGTAGGCATACTTCTGTCCCCTTCCTGCAAGCCTTCTCTGTCGTCTTCATTCCTACTTCCAAGAAGGTTCTCCAGGAAACCTACAAGGACTGGGCTTGTGCTGCCCAGAGCTACTCTTGGTCCTGGCCTTATATTTGCCTACACAAATCAGATCCCGTTTCTCTCCCTTTTGGAAAG
Seq C2 exon
GATGCTGTAGCCGGAGACCGGGCCTTATTACCCGTCTGGAACAATGGGATGAGCCATGGGTTGATGACTGGGACAGATCTGAGTTTCCAGATGGACAAAAAAGTTTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429:ENSMUST00000109967:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(90.6=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types