HsaINT0188243 @ hg19
Intron Retention
Gene
ENSG00000213967 | ZNF726
Description
zinc finger protein 726 [Source:HGNC Symbol;Acc:32462]
Coordinates
chr19:24102175-24102884:+
Coord C1 exon
chr19:24102175-24102301
Coord A exon
chr19:24102302-24102788
Coord C2 exon
chr19:24102789-24102884
Length
487 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AATTATTTTTAATAAAACAGGTA
3' ss Score
5.17
Exon sequences
Seq C1 exon
GGACTGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAGTGCCTGGACACTGCACAGAAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTGGCCTTCCTGG
Seq A exon
GTGAGGATAACTTTAATACAAAATTTTTAATATAAACTAAAGCTTTTATTTTTCTTTTGTAGTATGTTTTCTGGTAATTTATGCTTTCCTATTTCTGTTTTCAAGAAAATCCTGGGGATTTGTCTGTTTAGAAAAAATTTCTTCAAGATGTTTCATCCTGACCTGAAATTTCCACATTCCTGAGCTGATCTGTGTCTTTCGCTTTAGATTAGTGGTAATTTCAGAACCTTAGTGGCATAAAATATTGTTATTCACACCTTAAAATCCAAGTGCCATTACCAATTTTTGCTTCAGTAGTACCAGGCAGTGAAATTAAGAACCTACAAAATTAAAATATTCTGTAAATATTTAAAAATTTCTGTTATAAATTAGTATATGGGATAAATTTATTAGAATATTCTATTATATCCCTTTTACTTTGCACATTACTAAGTTGGTAATTGGAGAATATGAGCAAGATTCATGTTAATTATTTTTAATAAAACAG
Seq C2 exon
GTATTGCTGTCTCTAAGCCAGACCTCATCATCTGTCTGGAGAAAGAAAAAGAGCCCTGGAATATGAAGCGAGATGAGATGGTGGATGAACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213967-ZNF726:NM_001190829:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATTTAGGGATGTGGCCA
R:
GGGGTTCATCCACCATCTCAT
Band lengths:
214-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)