MmuINT0179483 @ mm10
Intron Retention
Gene
ENSMUSG00000071291 | Zfp58
Description
zinc finger protein 58 [Source:MGI Symbol;Acc:MGI:99205]
Coordinates
chr13:67494007-67494729:-
Coord C1 exon
chr13:67494603-67494729
Coord A exon
chr13:67494103-67494602
Coord C2 exon
chr13:67494007-67494102
Length
500 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTCTCTTTTCCTCCAAACAGGTC
3' ss Score
12.91
Exon sequences
Seq C1 exon
GAAATGCTGTCATTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGCCTGGAGCCTGATCAGTGGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCATCTGGATTTCCTGG
Seq A exon
GTGAGGATCATGTCCCCTTTGAATTCTTATTTCACTGTCAACGCGTTTCTTCCTCTGTACATTATCTCACACAAGCTTATGTTTTCCCACAGCACGTTTCATCTTCTTAGTTTTAAAGAAAAATTAGGGAATGTGCTTAGGCGGGAAACACTGCTTTCTCTTTTGTGTGTTTAGCCTGTCTGTGTTGGTTGAATGCATCCTTCTTCACAGAAGTGGGAATGTTAGAAACACTGTTTCAGTAGGCATGTACCTTACATAGAAAAAAAACAAAGTTTCACAATTTAATTTTAATGCCTTTCCCTTTAAATTAAACTCAGAATCTGGACACTGTATCTTCCTTCTCATAATGTAATGATCCTGTCAGAAGACATTTAAGGAACTAATTGTCTGTAGTCATTTATTTCAGCATCTCTTTCCTTACAAACACAGCGCTGAAAGGGACATGCCCACTCCCAGGAGAAGGACACTTGAACAATCTTGTTCTCTTTTCCTCCAAACAG
Seq C2 exon
GTCTTGCTCTCTCTAAGCCATTCCTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071291:ENSMUST00000076123:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCATTCTGGGATGTGG
R:
GGCTGCTGCTTGTCTCTTCAC
Band lengths:
206-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types