HsaINT0188255 @ hg19
Intron Retention
Gene
ENSG00000234444 | ZNF736
Description
zinc finger protein 736 [Source:HGNC Symbol;Acc:32467]
Coordinates
chr7:63796637-63797360:+
Coord C1 exon
chr7:63796637-63796763
Coord A exon
chr7:63796764-63797264
Coord C2 exon
chr7:63797265-63797360
Length
501 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTTTTTTTCTAATAAAACAGGTC
3' ss Score
7.87
Exon sequences
Seq C1 exon
GGAGTGTTGACATTCAGGGATGTGGCTGTAGAATTCTCCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAGCAGCGTTTGTATAGGGATGTGATGTTAGAGAACTATGGAAACCTGGTCTCCTTGG
Seq A exon
GTGAGAATAACTTCAATATACAACTCATATTCTACATTAAATATTTTATTTTCTTCTGATTTTTTTGGAGGTTCTGCTTTGCATAAATGAGTTTCAGAATCCTGCTTCAAAAAGAAAAAATTGGGTATCTGTTGAGGTAGAAAATATAATCTTCAAGATGTTTCATCTTAACATTAATCTTTCCCTTTTTTGAGCTCATCTGTATACTTCAGTCTAAATTAGTGGTAATATCAGAAATTTAGTAGCATAAAATATTGTTACCCACACCTAAAAATGCAATTTTCACAGCTGATTTTTGATTCAGTATTACTGGGTAATAGAGCTAAGAACCACAAATTTAAAATACTTTCTAAATATTCTAAAGTTTCTGTTAGGAAACAGTATATTAAAATTAATTTTCTAGAGTCTTCTATAATGTTCTCTCTTCTCTACTGAGCATAGTACTAGATTAGTAATCAGATTATCCTAGCAAGAGTCATGTTTTTTTTTCTAATAAAACAG
Seq C2 exon
GTCTTGCTATCTTTAAGCCAGACTTGATGACCTGTCTGGAGCAAAGAAAAGAGCCTTGGAAAGTGAAGAGACAGGAGGCAGTAGCCAAACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234444-ZNF736:NM_001170905:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGTTGACATTCAGGGATGT
R:
CTGGGTGTTTGGCTACTGC
Band lengths:
223-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)