HsaINT0188358 @ hg19
Intron Retention
Gene
ENSG00000196453 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:22213]
Coordinates
chr7:149152268-149158053:-
Coord C1 exon
chr7:149157906-149158053
Coord A exon
chr7:149153129-149157905
Coord C2 exon
chr7:149152268-149153128
Length
4777 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTTTCTTCCATGAACACAGGTT
3' ss Score
6.35
Exon sequences
Seq C1 exon
GCAGGGGATCGGCGGGAGGAAGGCTGTCGGAGCCAATCAAGCCGCCTCCAGACCCCAGCACGTCGCCTGGGCTGCGCGCTCCGACTGCGCCTCCGCCCGCGCGCCTCCCGGCCTCGCCCGAGGGTGCCTGGGCAGGCGAGGACCCCAG
Seq A exon
GTGAGAGGCCGGAGGGTCCTGGAGGGTGGGAGGCCCCGGCGGTTCGGCCCGGGCTCCACGACGGGCTGGCCCGGGCTCAGGGCGTGTCCGTCGCCGCCGGGCGGCTCGCTCGACACTGTTCGCTCCTACCGGCTGTAGATGGAGCTGTCTGGGTTCCGGCAGCCTCCGACGAGCCTCGGAGTGTTTCTCTTTAAACGGCCTGAGAGGGACATGCCTCCCAGGATGCAGTTTGTAGCAACATGGCAGCTGCTGTGCAGCTCCCCTGCTAAAGAGGCGCCGGGACGGCAGCGCAGCTCGCAGCCGGGGCCGGGGCCGGAGCTGGGGTCCCAGCCGCGGCCGCAGAGGGGCGGCGCGCGGGCCGGGGGCCGCCGTTGAGGGCCGGGGCCCAGCTCGCCGCCGGGACGCAGCCGGCCGGGCCGCCCGCACAGCCGCGCGCCCAGCTCCGACGCCGCCGCTCGGGCTCCGCGACCCCGCGCCCGCTCGCCCCGCGCGCCCCGAGCAGGCCGGGGCCCGACGGCCGCGCGCGAGCCCCGGCGGGGAAGACAGGGCTGGGCCGGCGCCGCCTGCGGAGAGCGCCGGGCGGCCGGGCCTGCGTGGGGCCGCGCGCAGTAGCGGCGGCGGCAGTAGCGGCGGCGACTCCGGGGGCCCGGGCCGGACAGCGCAGGGCCATGGCCGAGGCGGCCCCGGCTCCTGTGAGGGCGGCCCGCGCGCGCACGGACGCGCGGCCTCGGGGCCCCGGGGACGGCCTGCGTGTCCCGGGCTCGGCGGCCCGGCCTGGGATCTCGGTAAGGGGCAGAAACGCTACGACGTTGGCGCGGGGGGTGGGGGCGCCCTGGAGGGGGCCCGCGCGTCTTGACCCGGGCGGTGGGGGAGGGCTACGGGCCTCGCCGCCGTCCGTGCGAGGGAGGCTGCTCTCACGCCCGGCCCGGCACACACGCGGCCCCGAGGTGGGGCGCCCGGAGGCGCGCTCGCTCCCTGCGGGGCCCGCGCTGCGTCCGTCGGGGTAGCCGCCGGCACGTTTTCCGCAGAGCTCGGCCCCGCGGAGCCTTCCCCGGCCCGGGCGCGGCGCTGACGCGGCTCTCCCATTTCGCAGAACGGAGACACTGAGGCACAGACACCTGGCGGCGACCCGCCCTGCCGGCCCCAAGGTCACGTAGCAAGGCATCCGTGGCACGGTGCGGCAGCCCCAGAAAGGCCTGCCCAGAGGGCTGCGGGCCTGGACGGGGAGGGGGTGGCTCTGGCGGCGGCCGCCCCTGGGTGAGGGGCTGGGCCGCCCTGGCAGCGGACGCGGCCCGTCGGGGGCGGCGGGGGAGGCCGGGCAGCGCCCAGCTGGGCATCTCCGCGGTGGGAGCAGGTGACCCTCTGAGCTCCAGCCTCTGCCTCCGGCCTCTGCGTCTGGAAGGTCGTAGGCTAAACTTTGAGTGCCCTGACAGATGGTGTCTGGGGAGTAAGCTTCTCAGGGGTTGGGGGCTGATGTTCCTCTTCAGGAAGACACTCTTAAAAAATCATCCCTCAGATCCTCCCGCAGACCTGCTCTTTGAGACGCCCTGGCCGTGCTAGTGAGAGGATTACTGCATGGGAGTCAGTGCCTTTGAGCCTCAGTTTCCTATTGTGTACACAGGAAGGAGGCAGGATATATAGCTTTCTAAAAAGCATCCCAATTCTTTAATCAAAAAAAAACTCATGAGAAAATAAAATCAAACGAAGATGTTTACATGCCTTACTCTGGGCTCAGGCCTTCGGGGCCCTTGAATGGTATATAATGCTGGGTGAACCATACTGGGTCATTCAAAAAAATGCCATGACTTTCTTAATAAGTCAGATACTGTGGTTATGGATGCTTCTGCTAATGTGGCATGAATCCTGGAGAATCCATCCACTCCTGATCCGTCGGGGAAGGAGGGACCGTTAAATCCTACAAATATGGTTCAGAAGAATTCTCCCTCCAACCCCCTACCAGGAATTTGAGAATTTGAGCTTATTCGTTTTAGGTATATTTACAGCTCCCTCCCTCTCTTTGGTCATTTCTTTCTGCTTAGGGTAAGATAAGCGGCAGGTTTACCGGGATGGATTAAATTATAGCAAAGGGCTTTTATTTGGGAGGCGAGGGAGGGAACACCCTCCTGTGGCCCCTCTACAGTCCTCCAAATCCGGAAATGGAGAGAGACAGTCTAATAATAGCAAAGAAATAGTATTTTCCTTTGAGCTCTGATTTGTCTAGCTGGTAAAGATGCCTTGGTCTGCTGGCTCTGTTTACTATACTGGAGGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTCATTGTTTCAGTTAAACCTCTGCATTACTCAGAGAGACTAACTTGCTCCCCAGGGATTTTTTCCTCTTCTTCTTTCTAGTGCTAGGCAGATACCCTAATCTCCCTCTAAGGCAAGGGCTGTAATGTGCCTATTGTGTTGCGTTAGGCAGTCACTTTCCCTGAGAGCCAGGCGCCTAGCCTCCAGGGCCCCCAGCGCTTCCTTCACAGGGAATGAAGAGTTCAGAGGTGGCTTAGCTGTTGATGAGCCTGCAGGTTTAGGGGTCTGTGAGCTCCTTGAAGATGTCTGCAAAATTCTGTGTATGTGCCCTTTTGTCTTTTTTGAGGACAAGAACCCAAAACTTTCATTAGGTTTTCAAAGAGGTCCCTGACCCCAACTTAAATGATAATATCTCTAAAGGCAAGGCCTTCCTCCCCACCTCTCCCAACCCTATCAAACCTGCCACAGGTCTTTGTGTATAAATAATATCCAGGCCTCGGGATTTTAGAGGTAAAAAGGATTCAGAGCACACACCTGCCTGGCCAGCTGCCTCAGTTGACAGTTAAGGCCTCAAGGTAGCCTGCAGGCTGTGGAACCAGACCACTGGGTGACCTGGGGCAAGTTGCTTAGTCTCTCCTGTCCCCAGTGTCTTCCTGTACTAAGTATGGATAGTAACTCTAGTAGTACCTGTTTCATAGATTTTGTGAGGATTAAATGAGATAATCCTTTAAAATGCTTAACACAGCTCATGGCACATAATAAATGCTGGATAATTGTTAGCCATTCTCAGCTGATTAGCGCTCATGTCTGGTTCGCGGCAGAGGCTATTAGACGATACTATCTCAAAAACCTTTTGTGAATAGGATCTTGAATATTCAATCCGTGGCTTAAAAGTGTGATGCTGTCACAGTTAAGTCACCTATAAATGAACCAATAAAAGAAAAAAGCTGTAGAAGATATGGAATTGCTTTAGATAAGTCTCTGATAGGTGACTAAAGGAACGTCATTGTTTATCCTAATAATTTTTTTGTAACTCAACAATTTACTCTTCAGCCGGCATTTATCAAACACATACTATATGTCAGACTGAACACTGGGGCTATGCCAATTTTCAACGGAAGAAAATTGAAATTTTAATTAAAGACCACTTGGATATAGAGCATAGTGACTGAGCAGATTGACTGAAGGAAGATGATGAGGGAGTGGACAGAAATTGTTACAGGAGAAATTGTGTTAGGTTCCAATAAAGATACTGATGATCTAGGTAAATACATAACTAGTTACTCACAGAAGATCGTGGCTTCGCCTCCCCAGTGATTCAGGAATTCTCTCGATGTGAGTATGGCAGGGTGAGGAACAAGGAGAGCGTGGGTCATTGAGATCCCAGAAGGACTCCAAGTCTTTATGTTGGTCTAGTCCCCCCAAATCTGGATACAAGTCACCAGTCCAGCTGACTTCTGCTCTACTTCCCCATCCTTCCAGGCCTCACTACTTCCTCATTCCCCATGTCGGAAACCCCAGGGTGGAACCCAGACCACCTGAGCACACCTGCTGCAATGGACTGCTGCCCACTCCTAGGAGTGGTTGAATTGCCTGCCTTCACCTGCCTCGATGTCTCGCTCTGCTTATAGCAGAAGCCAGGCCAGAATACCCAGAAGCCCGTTCAGCCTCTACAGCAGGGGCCGGGCACATAGAAGATGTTTCCAAGTCAAACATACATATACCATACTGACTCATTGATATGAGTCTGCAATGCAACTGTTATCAAAGAGTAAGAGTCTGGGAAACTTCAGATAATGTCATGTCCTCACTTTTGGACCAAGCGAAGGAAGGAACCCAGGGCACCACAAAGGCCTAATGCTGGTAGAAGTGGTGGTGGCTGGATGCCAAGTCCACCTTCCAGTTAAGAACATTAACAGTTCTGGCCCCTGCTGGTGAGCCCCCCACCCCTGCTGGGAGATGTGGGATAGTAAGTGCTTGGCTTTTACAAAATTCTGCTCTTTTGTTTCTCAAAGTTTTATGTTCAGTGCTTCAACAACTCAGGTAGTGTGTGTGTCAGATATTATTATCCTCGTTTTATGGATGAGGACACAGGACACTAAGAACAGAGAGGTCAAACGACCGATCCAGAGTGACACAGGTGGCAATAGGTGTAGACAGGGCCAAAAGCTCTAACAGGAGTCCAGCACCCTTCCGCTCTCCCACACTGCTGTTCGTAAGGTACCCGTGCAATGTATGTTGTGAAAAAGGAGATGGCTCTGTGAGAAACAAAAGGTAGCATAATCATCTTTCATTTGCGGTTCATAATAGTGGTATAATTGATGTCTAAATTGGTGCTGTGGTCTCTAGAAGAGATTCACATATGAGGGGCACATATTATTGCTACCAAACGGAAGCACTTTTTATGTGTATACTTGTCTTTGGGTTTTATTTTGCTAGCTGGAGACTGTGGCCTTTAATCCTCTTTTCCTTTCTTCCATGAACACAG
Seq C2 exon
GTTCAGCAGCTGGACATGGAGAACCAACGCTCATCACCTCTGTCGTTCCCCAGTGTTCCACAAGAAGAAACCTTACGTCAGGCCCCTGCTGGACTCCCCCGAGAAACTCTGTTCCAATCCCGCGTTCTTCCTCCCAAAGAAATTCCTTCTTTGTCTCCCACCATTCCCCGTCAAGGCTCCCTGCCCCAAACTTCCAGTGCTCCCAAGCAAGAGACTTCTGGCCGGATGCCACATGTGCTCCAGAAGGGACCCTCACTCCTGTGTTCTGCCGCTTCTGAGCAAGAGACTTCTCTCCAGGGCCCCCTGGCTTCCCAGGAAGGGACCCAGTATCCACCCCCAGCTGCTGCTGAACAAGAAGTCTCCCTTCTCTCCCACTCCCCCCACCACCAGGAAGCCCCCGTTCACTCCCCTGAAGCTCCTGAGAAAGACCCCCTGACCCTTTCCCCAACAGTTCCCGAGACTGACATGGACCCGCTGCTCCAGAGCCCGGTTTCCCAAAAGGACACCCCTTTCCAGATCTCTTCTGCAGTCCAGAAGGAACAGCCGCTCCCCACGGCAGAGATCACCCGCTTGGCTGTGTGGGCTGCCGTCCAAGCAGTGGAGAGGAAGCTGGAGGCCCAGGCCATGAGGCTACTGACCCTGGAAGGCAGGACGGGGACAAATGAAAAGAAGATAGCCGACTGCGAGAAGACAGCCGTGGAGTTCGCGAACCATCTGGAGAGCAAGTGGGTCGTGTTGGGGACCCTGCTGCAGGAGTATGGGCTGCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAAAAACAGAAATTTCTGGATCCTGCGGCTGCCCCCCGGCAGCAATGGAGAAGTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196453-ZNF777:NM_015694:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.638
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF124173=DUF3669=WD(100=28.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)