MmuINT0179847 @ mm9
Intron Retention
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:47993843-47998113:-
Coord C1 exon
chr6:47997985-47998113
Coord A exon
chr6:47994701-47997984
Coord C2 exon
chr6:47993843-47994700
Length
3284 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
CCTTCTCTCCTTGAACACAGGTC
3' ss Score
8.16
Exon sequences
Seq C1 exon
CGGCGCGGGGCCATGGCCGAGGCGGCCCCGGCTCGGGGGAGGGCAGCCCGCGCGCGCACGGACGCGCGGCCTCGGGGCCCCGGGGACAGCCTGCGTGCTCCGGGCTCGGTGGCCCGGCCTGGGGTCTCG
Seq A exon
GTAAGGGCCGGGCGCGGCGACGTTAGCGGGGAGGGGGCGCCCTGGCGGGCTCGCGCGCCCCCTGGGGGGGAGGACGGCCGGGGCGGGCGGGAGCGGCGGCCGTCCGTGCGAGGCTGCGCGGCCGCACGGCTCCCGGACACGCGGCCCGAGGTGGGGCGCGGGCGGCGCGCTCGCTCCCTGGCTGCGGAGCCGGCGCTGCGTCCGTCGGGGTGGCCAGCGGCACGTTTTCCGCAGAGCTCGGCCCCGCGGAACGGCTCCCGGCCTGGGCGCGGTGCTGACGCGGCTCTCCCATTTCGCAGAGCGGAGACACTGAGGCACGGACACCCGGCGGCGACCTGCCCTGCCTGCCCCAAGGTCACGTAGCGAGTCGGCCCGGGCTAGGTGCCCGCAGTCCCGTAGAGGCCTGCCCAGCGTGCCGCGGGCCTGGACGGGGAGGGGTGGCGCTGGCGGCGGCTTCGCCAGGGTGGGCGGCCTGGGCTAGCCGAGCACTGGCTGCGGCCCGTCGGGGGAGGAGGGGAAGGCCGGGCAGCGCCCAGCCCAGCGACTCCGGTGTGGGGAGCAGTGTGATCCATAGCCTCTGCGTCAGGAGCACCCCGAGTCAAACTTGGGGTACGGATAAATGGGGTCTGGCGAATGAGAGCCTAAGAGGTTGATGTTCTTCCGAGGGCCATTCAATAATTAAACGCCCTCCCACCCAACGTGCTCTCTGAGGCACCCTGGCTGTGCTAGGCGGGTTTGCTGCATGGGAGTCCGTGCCTTTGAACCTGTTTCCATGTATACTGGAAGAGATAGGATAGATGGCTTCCTAAAAACCTCGCAGTTCTTAAAATAACAATAACAAAACACCTGGGAAATAAAATGAAGATTTTTTTTTAAACATTCTTACCTCTGGGCTTAGGTCTTCATGGCATGTAATTCTGAGTGAACCATCCTGGGTCATGTAAGAAAATGGCACAGCTTTTGTAAAAAGTCAGATGTGTGTCGTTATGCATGTTTCTAGTATGTTGGCATGGATCCTGGAGCCCCTAATCATTTACCACACAAGGGTGGGGAGGAAAGAGAGACAGGTAGAAGCTGTGAAATGTGGCGCAGAGGAATTCTAACGTTCCTCTCCTGCTAGCAGGTAGCAGCTTGAGAATTTGAGCTTATTCGATTTAGCTGTCTTTGCTTGAGGGTAAGGTCAAGCCACAGGTTTGCTGGAGCTGATGACATTGTATCAGGACTTGGGGGGGGGGGGGGCTATACCTTATGACCCTTCACCCCTTTCCAGTATTCCAAATCCCTAAATGGAGAAGGAAAAAAAAACCATTTTCCTTTGAGCTCTGTCTGATTCAGGTGGTTAGTAAAGATGTCTTGTCCTGCTGGCTTTTTTTTTTTTTCTTGTCCCAGGTAAAACTCTGTTTGGCACCTAACCTGCCCTCCAGGTATTCTTTTCCCTCTTCCCACTAATTATAAGCAGATCCCCTAGTCCTCCCTCAGGCAGACTGCCTTAATATGCCCATTGTGTTGGCTCTTGGTTCCTTTAGCTGTGTGGTTGAGGCTTCCACCTAAGGGGGCTGTCTAGTATGCTACCAACTTAATAGTGAAGGGTTGAGAGTAAAGGGGTCTTTGAACTCTTTCAGGGTTTGCAGAATTTTGTATTTGTATGTATTTTGAGACCTCATAATTTGCATTAGGTTTCCTATGGGGCTCTTGGCACTACCATAAACTGTATGTCTTTAAGGGATAGGGCCCTGCATCCCAACATGAATGCCTGTAGTAAGCCTCCCATAGGTGTTTTTAATCACCAAGCCTTTGACTCAGGACTCAAACCTATCAGCTGCCTCTGTCTATAATTGAGGCCTAGAGGTCACCTACACTCTCTGGAGTCTGTGTTACCTGAGGCAAGGTAGATAGAACCTCTCCTATTTTCAGTGTTTTCATAGGCTAAATGTGGCTAATAATTCTAGTAGTAGAATTTCATCAGGTTTTGTGAGGCTTAAATGAGATAATCCTTGAAAATGCTTAACACAGTTTATGGCACATAATAAATCCTACATATTTACTCTGCTAATGAGCCCCCGTATAACAGAGTATTGCTCATGCTTTCTCAAAGGTCTTTCCTGGACCAGGACTCAAAATCTCCAGTCCTAGCCTTAAAAGTAGGATGCTGCTTTTCTGAGTCACCTGTATGTGAATCAATGAACAAACTAAGAAAAATAGCTATGGAAGGTATGAAGTGGGTTTAGATAATTCTCTGATAGATGACAAAAGGAACCTCATACCTCATAACCTTGATACCTATCTTTCTCAGTAGGCATTTACTGAGCACACACAATAAGACTGAACATAAGGCTTATGCTAATTTCCGAGTGAAGAAAACAAGTTTTAATTACCTTCCTTACAGAGCACTCATAGAGAGCATAGAAGCTGAACAGATTCCTTGAAGGAATATTATGAAGAAAAGAACAAAAATTGTCATGGAAAAATTCCGCTCAGATCCAGTAAAGGTATTGAATGGCTAGGAAAATGAACTGGGTACTGACAGAAGAGTGTGGCGTCACCTCCATGGTGGTTTAAGATTTTAACATAGATATCAAGATGGGGACCAGAGTGCCAAAAGAAAACACATCTTTCTTCTGCTTCTAGTCCCCAACACTCTTGTCATACTCAAAACTAGGTTAATGTCTCATGGCGTCAATCACCACAGGCCTTTCTTCCTAGTCCCTACCTCAAGAACCACAATGAGGGAGCCCAGCCCAGCAATGTACACCTGTCCCAGTGAACCATCTACCTAGGAGACCTGGGCTCCTGAGGAGGCTGAATTGCCGGTGTTAGCCGTCACCATGTCTCACTGTCCGTTACTAGTAACAAAAGCCAGTTGCAGTACCCCAAGTCCATCCAGCCTTTGCAGACCTTTGCAGACACACGAAGGCAGGAGTCACGTGAGCAGGCTATAGAGAGCAGGGCAGCAATAGGTATTAACAGAGCCACCAGCTGAGCGTTCTGATTTCTTCTCAGTCCCCTTCACCTCCTACACGCCATTCATCACTTTTGAAATGTAGGGGAAATATGGCTCTGTAGAAAACAGAAGGTAGCGTAACCATCTTTTATGTGTTGTTCCTAATAGAGTATCATCGATGTCTAGATCAGTGACACTTTTGGAAGAGATTTGCTCTTTTGGAATGTGTCTTCTTGCTTCCAAAACTGAGAACCTTTTAGTGTGAACGCTTGTCTCTTGGATTGTTTTGCCATCTGGAGACTGTGACCTTCAATCCTGTCTTTCCTTCTCTCCTTGAACACAG
Seq C2 exon
GTCCAGCAGCTGGACATGGAGGACGATCGCTCGTCACCACTGTCATTCTCCAGTGTCCCACACGAAGAGTCTGTGCGTCAGGCCCCTGCTCGACTCCCTAGAGAAACTGTGTTCCCTTCTTGCATTCTTCCTCCAAAAGAAGTTCCTCCTTTGTCTCCCACTGCCTCCCGGCAAGGTGTCTTGCCCCAGACTGACAGTACTACTAAGCAAGAGACATCCAGCCAGATGTCACATGTTCTTCAGAAAGGACCTTCACTCCTGTATCCTGCCACTTCTGAGCAAGACACACCTCACCAGGTATCCCTTGCTTCCCAGGAAGAAACCCAGTGCTCTCCTTCAGCAGCTGCTCAGGGGATCCCCTTCCTCTCGCACTCCGCCCACCGTCAGGAAGCTCCACTCCACTCTCCTGAGGTTCCTGAGAAAGACTCGCTGACTCTCTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTGCAAAAGGACACTCCCTTCCATACCTCTTCTGCCGCCCAGAAAGAACAGCCACTGCCCACTGCAGAGATCACTCGATTGGCTGTGTGGGCTGCTGTCCAAGCAGTGGAGAGGAAACTGGAGGCCCAGGCCATGCGACTACTGACTCTGGAGGGCAGGACAGGGACAAATGAGAAGAAGATAGCAGACTGTGAGAGAACGGCTGTGGAGTTCGCAAATCATCTGGAGAGCAAGTGGGTTGTACTGGGGACCTTACTGCAGGAGTATGGGCTGCTGCAGCGGCGCCTGGAGAACATGGAGAATCTGCTGAAAAACAGAAACTTCTGGATCCTGCGGCTGCCCCCAGGCAGCAATGGAGAAGTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477-Zfp777:NM_001081382:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.646
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=28.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: