MmuEX0053607 @ mm9
Exon Skipping
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:47995547-47998113:-
Coord C1 exon
chr6:47997985-47998113
Coord A exon
chr6:47997631-47997685
Coord C2 exon
chr6:47995547-47995598
Length
55 bp
Sequences
Splice sites
3' ss Seq
GCGGCTCTCCCATTTCGCAGAGC
3' ss Score
8.58
5' ss Seq
AAGGTCACG
5' ss Score
2.61
Exon sequences
Seq C1 exon
CGGCGCGGGGCCATGGCCGAGGCGGCCCCGGCTCGGGGGAGGGCAGCCCGCGCGCGCACGGACGCGCGGCCTCGGGGCCCCGGGGACAGCCTGCGTGCTCCGGGCTCGGTGGCCCGGCCTGGGGTCTCG
Seq A exon
AGCGGAGACACTGAGGCACGGACACCCGGCGGCGACCTGCCCTGCCTGCCCCAAG
Seq C2 exon
AGCACTCATAGAGAGCATAGAAGCTGAACAGATTCCTTGAAGGAATATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477-'1-3,'1-2,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: