MmuEX0053607 @ mm10
Exon Skipping
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:48043844-48048911:-
Coord C1 exon
chr6:48048693-48048911
Coord A exon
chr6:48047632-48047686
Coord C2 exon
chr6:48043844-48044701
Length
55 bp
Sequences
Splice sites
3' ss Seq
GCGGCTCTCCCATTTCGCAGAGC
3' ss Score
8.58
5' ss Seq
AAGGTCACG
5' ss Score
2.61
Exon sequences
Seq C1 exon
CGATCCCTTTGTGAGCGCAGGTTTTGAAAGCCAACGACCGGGTTCTGGGTTTGAGACGCGCAGGCGGCCGCGGGCGGAAGGCTGTCGGAGCCCATCGGCCCGCCTCCAGACCCAGCGCGCCGCGCGCCCGGGATTCCGCTCCGCCGCCTCCGCCGCCGCCGCTGCCCGCCGCTGCCCGCCGCGGCCTGGCCCGAGGGCGCCGGGCCGCCAAGACGCCAG
Seq A exon
AGCGGAGACACTGAGGCACGGACACCCGGCGGCGACCTGCCCTGCCTGCCCCAAG
Seq C2 exon
GTCCAGCAGCTGGACATGGAGGACGATCGCTCGTCACCACTGTCATTCTCCAGTGTCCCACACGAAGAGTCTGTGCGTCAGGCCCCTGCTCGACTCCCTAGAGAAACTGTGTTCCCTTCTTGCATTCTTCCTCCAAAAGAAGTTCCTCCTTTGTCTCCCACTGCCTCCCGGCAAGGTGTCTTGCCCCAGACTGACAGTACTACTAAGCAAGAGACATCCAGCCAGATGTCACATGTTCTTCAGAAAGGACCTTCACTCCTGTATCCTGCCACTTCTGAGCAAGACACACCTCACCAGGTATCCCTTGCTTCCCAGGAAGAAACCCAGTGCTCTCCTTCAGCAGCTGCTCAGGGGATCCCCTTCCTCTCGCACTCCGCCCACCGTCAGGAAGCTCCACTCCACTCTCCTGAGGTTCCTGAGAAAGACTCGCTGACTCTCTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTGCAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.669
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF124173=DUF3669=WD(100=28.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCGGAGCCCATCGG
R:
TCCTCCATGTCCAGCTGCTG
Band lengths:
162-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types