MmuINT1018903 @ mm10
Intron Retention
Gene
ENSMUSG00000108101 | Gm45738
Description
predicted gene 45738 [Source:MGI Symbol;Acc:MGI:5804853]
Coordinates
chr6:48045548-48045955:-
Coord C1 exon
chr6:48045775-48045955
Coord A exon
chr6:48045600-48045774
Coord C2 exon
chr6:48045548-48045599
Length
175 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTTAATTACCTTCCTTACAGAGC
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATCCTACATATTTACTCTGCTAATGAGCCCCCGTATAACAGAGTATTGCTCATGCTTTCTCAAAGGTCTTTCCTGGACCAGGACTCAAAATCTCCAGTCCTAGCCTTAAAAGTAGGATGCTGCTTTTCTGAGTCACCTGTATGTGAATCAATGAACAAACTAAGAAAAATAGCTATGGAAG
Seq A exon
GTATGAAGTGGGTTTAGATAATTCTCTGATAGATGACAAAAGGAACCTCATACCTCATAACCTTGATACCTATCTTTCTCAGTAGGCATTTACTGAGCACACACAATAAGACTGAACATAAGGCTTATGCTAATTTCCGAGTGAAGAAAACAAGTTTTAATTACCTTCCTTACAG
Seq C2 exon
AGCACTCATAGAGAGCATAGAAGCTGAACAGATTCCTTGAAGGAATATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108101:ENSMUST00000203645:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCCCGTATAACAGAGT
R:
TCCTTCAAGGAATCTGTTCAGCT
Band lengths:
202-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types