MmuEX1028649 @ mm10
Exon Skipping
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:48043844-48045890:-
Coord C1 exon
chr6:48045775-48045890
Coord A exon
chr6:48045497-48045599
Coord C2 exon
chr6:48043844-48044701
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTAATTACCTTCCTTACAGAGC
3' ss Score
9.13
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTCTTTCCTGGACCAGGACTCAAAATCTCCAGTCCTAGCCTTAAAAGTAGGATGCTGCTTTTCTGAGTCACCTGTATGTGAATCAATGAACAAACTAAGAAAAATAGCTATGGAAG
Seq A exon
AGCACTCATAGAGAGCATAGAAGCTGAACAGATTCCTTGAAGGAATATTATGAAGAAAAGAACAAAAATTGTCATGGAAAAATTCCGCTCAGATCCAGTAAAG
Seq C2 exon
GTCCAGCAGCTGGACATGGAGGACGATCGCTCGTCACCACTGTCATTCTCCAGTGTCCCACACGAAGAGTCTGTGCGTCAGGCCCCTGCTCGACTCCCTAGAGAAACTGTGTTCCCTTCTTGCATTCTTCCTCCAAAAGAAGTTCCTCCTTTGTCTCCCACTGCCTCCCGGCAAGGTGTCTTGCCCCAGACTGACAGTACTACTAAGCAAGAGACATCCAGCCAGATGTCACATGTTCTTCAGAAAGGACCTTCACTCCTGTATCCTGCCACTTCTGAGCAAGACACACCTCACCAGGTATCCCTTGCTTCCCAGGAAGAAACCCAGTGCTCTCCTTCAGCAGCTGCTCAGGGGATCCCCTTCCTCTCGCACTCCGCCCACCGTCAGGAAGCTCCACTCCACTCTCCTGAGGTTCCTGAGAAAGACTCGCTGACTCTCTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTGCAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477_MULTIEX1-3/3=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.669
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF124173=DUF3669=WD(100=28.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTTTTCTGAGTCACCTG
R:
AGTCTGGGGCAAGACACCTT
Band lengths:
256-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types