MmuINT0179847 @ mm10
Intron Retention
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:48043844-48048911:-
Coord C1 exon
chr6:48048693-48048911
Coord A exon
chr6:48044702-48048692
Coord C2 exon
chr6:48043844-48044701
Length
3991 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTCTCTCCTTGAACACAGGTC
3' ss Score
8.16
Exon sequences
Seq C1 exon
CGATCCCTTTGTGAGCGCAGGTTTTGAAAGCCAACGACCGGGTTCTGGGTTTGAGACGCGCAGGCGGCCGCGGGCGGAAGGCTGTCGGAGCCCATCGGCCCGCCTCCAGACCCAGCGCGCCGCGCGCCCGGGATTCCGCTCCGCCGCCTCCGCCGCCGCCGCTGCCCGCCGCTGCCCGCCGCGGCCTGGCCCGAGGGCGCCGGGCCGCCAAGACGCCAG
Seq A exon
GTGAGCCGCGAGGGACCGGGAGCCGCGACGGGCTCAGGGCGTGTCCGGCGCCGAGGCGGCCCGCGCCTCACTGTTCGCTCCTACCGGCTGTAGATGGAGCTGTCTGGGTTCCGGCCGCCTCCGACGAGCCTCCGAGCGCTCCTCTTGAAACGCCTGAGAGGGACATGCCTCCCAGGATGCAGTTTGTAGCAACATGGCAGCTGCGGTGCAGCTCCCCTGCTGAAGAGGCGCCGGGACGGCCGCGCAGCTCGCAGCCGGGACCCGGGCCGCAGCCGGGGTCGCAGCGTCGGCCGCTCGGGGCGGGCGAGCGCGCCGGGGGCGGCCGCAGAGCGCTGGGGCCCAGCTCGCCGCCCGGGCGCAGCCCGCACAGCCGCGCTCCGACGCCGCCACCGCCGCCACCGCCGCCCGCGCCCGCCCGCCGAGCACAGCCCCGAGCAGGCCGGGGCCCGACGGCCGCGCAGCCCCGGCGGGTGAGGCCAGGCCGCGCCGCACTGCCAGCCCGCCCACGGCGCCGGGCCTGCGTGGGGCTGCGCGCGGCGGCGGCGGCGGCGGCGGGGACTCGCACGGCGCGGGCCGGGCGGCGCGGGGCCATGGCCGAGGCGGCCCCGGCTCGGGGGAGGGCAGCCCGCGCGCGCACGGACGCGCGGCCTCGGGGCCCCGGGGACAGCCTGCGTGCTCCGGGCTCGGTGGCCCGGCCTGGGGTCTCGGTAAGGGCCGGGCGCGGCGACGTTAGCGGGGAGGGGGCGCCCTGGCGGGCTCGCGCGCCCCCTGGGGGGGAGGACGGCCGGGGCGGGCGGGAGCGGCGGCCGTCCGTGCGAGGCTGCGCGGCCGCACGGCTCCCGGACACGCGGCCCGAGGTGGGGCGCGGGCGGCGCGCTCGCTCCCTGGCTGCGGAGCCGGCGCTGCGTCCGTCGGGGTGGCCAGCGGCACGTTTTCCGCAGAGCTCGGCCCCGCGGAACGGCTCCCGGCCTGGGCGCGGTGCTGACGCGGCTCTCCCATTTCGCAGAGCGGAGACACTGAGGCACGGACACCCGGCGGCGACCTGCCCTGCCTGCCCCAAGGTCACGTAGCGAGTCGGCCCGGGCTAGGTGCCCGCAGTCCCGTAGAGGCCTGCCCAGCGTGCCGCGGGCCTGGACGGGGAGGGGTGGCGCTGGCGGCGGCTTCGCCAGGGTGGGCGGCCTGGGCTAGCCGAGCACTGGCTGCGGCCCGTCGGGGGAGGAGGGGAAGGCCGGGCAGCGCCCAGCCCAGCGACTCCGGTGTGGGGAGCAGTGTGATCCATAGCCTCTGCGTCAGGAGCACCCCGAGTCAAACTTGGGGTACGGATAAATGGGGTCTGGCGAATGAGAGCCTAAGAGGTTGATGTTCTTCCGAGGGCCATTCAATAATTAAACGCCCTCCCACCCAACGTGCTCTCTGAGGCACCCTGGCTGTGCTAGGCGGGTTTGCTGCATGGGAGTCCGTGCCTTTGAACCTGTTTCCATGTATACTGGAAGAGATAGGATAGATGGCTTCCTAAAAACCTCGCAGTTCTTAAAATAACAATAACAAAACACCTGGGAAATAAAATGAAGATTTTTTTTTAAACATTCTTACCTCTGGGCTTAGGTCTTCATGGCATGTAATTCTGAGTGAACCATCCTGGGTCATGTAAGAAAATGGCACAGCTTTTGTAAAAAGTCAGATGTGTGTCGTTATGCATGTTTCTAGTATGTTGGCATGGATCCTGGAGCCCCTAATCATTTACCACACAAGGGTGGGGAGGAAAGAGAGACAGGTAGAAGCTGTGAAATGTGGCGCAGAGGAATTCTAACGTTCCTCTCCTGCTAGCAGGTAGCAGCTTGAGAATTTGAGCTTATTCGATTTAGCTGTCTTTGCTTGAGGGTAAGGTCAAGCCACAGGTTTGCTGGAGCTGATGACATTGTATCAGGACTTGGGGGGGGGGGGGGCTATACCTTATGACCCTTCACCCCTTTCCAGTATTCCAAATCCCTAAATGGAGAAGGAAAAAAAAACCATTTTCCTTTGAGCTCTGTCTGATTCAGGTGGTTAGTAAAGATGTCTTGTCCTGCTGGCTTTTTTTTTTTTTCTTGTCCCAGGTAAAACTCTGTTTGGCACCTAACCTGCCCTCCAGGTATTCTTTTCCCTCTTCCCACTAATTATAAGCAGATCCCCTAGTCCTCCCTCAGGCAGACTGCCTTAATATGCCCATTGTGTTGGCTCTTGGTTCCTTTAGCTGTGTGGTTGAGGCTTCCACCTAAGGGGGCTGTCTAGTATGCTACCAACTTAATAGTGAAGGGTTGAGAGTAAAGGGGTCTTTGAACTCTTTCAGGGTTTGCAGAATTTTGTATTTGTATGTATTTTGAGACCTCATAATTTGCATTAGGTTTCCTATGGGGCTCTTGGCACTACCATAAACTGTATGTCTTTAAGGGATAGGGCCCTGCATCCCAACATGAATGCCTGTAGTAAGCCTCCCATAGGTGTTTTTAATCACCAAGCCTTTGACTCAGGACTCAAACCTATCAGCTGCCTCTGTCTATAATTGAGGCCTAGAGGTCACCTACACTCTCTGGAGTCTGTGTTACCTGAGGCAAGGTAGATAGAACCTCTCCTATTTTCAGTGTTTTCATAGGCTAAATGTGGCTAATAATTCTAGTAGTAGAATTTCATCAGGTTTTGTGAGGCTTAAATGAGATAATCCTTGAAAATGCTTAACACAGTTTATGGCACATAATAAATCCTACATATTTACTCTGCTAATGAGCCCCCGTATAACAGAGTATTGCTCATGCTTTCTCAAAGGTCTTTCCTGGACCAGGACTCAAAATCTCCAGTCCTAGCCTTAAAAGTAGGATGCTGCTTTTCTGAGTCACCTGTATGTGAATCAATGAACAAACTAAGAAAAATAGCTATGGAAGGTATGAAGTGGGTTTAGATAATTCTCTGATAGATGACAAAAGGAACCTCATACCTCATAACCTTGATACCTATCTTTCTCAGTAGGCATTTACTGAGCACACACAATAAGACTGAACATAAGGCTTATGCTAATTTCCGAGTGAAGAAAACAAGTTTTAATTACCTTCCTTACAGAGCACTCATAGAGAGCATAGAAGCTGAACAGATTCCTTGAAGGAATATTATGAAGAAAAGAACAAAAATTGTCATGGAAAAATTCCGCTCAGATCCAGTAAAGGTATTGAATGGCTAGGAAAATGAACTGGGTACTGACAGAAGAGTGTGGCGTCACCTCCATGGTGGTTTAAGATTTTAACATAGATATCAAGATGGGGACCAGAGTGCCAAAAGAAAACACATCTTTCTTCTGCTTCTAGTCCCCAACACTCTTGTCATACTCAAAACTAGGTTAATGTCTCATGGCGTCAATCACCACAGGCCTTTCTTCCTAGTCCCTACCTCAAGAACCACAATGAGGGAGCCCAGCCCAGCAATGTACACCTGTCCCAGTGAACCATCTACCTAGGAGACCTGGGCTCCTGAGGAGGCTGAATTGCCGGTGTTAGCCGTCACCATGTCTCACTGTCCGTTACTAGTAACAAAAGCCAGTTGCAGTACCCCAAGTCCATCCAGCCTTTGCAGACCTTTGCAGACACACGAAGGCAGGAGTCACGTGAGCAGGCTATAGAGAGCAGGGCAGCAATAGGTATTAACAGAGCCACCAGCTGAGCGTTCTGATTTCTTCTCAGTCCCCTTCACCTCCTACACGCCATTCATCACTTTTGAAATGTAGGGGAAATATGGCTCTGTAGAAAACAGAAGGTAGCGTAACCATCTTTTATGTGTTGTTCCTAATAGAGTATCATCGATGTCTAGATCAGTGACACTTTTGGAAGAGATTTGCTCTTTTGGAATGTGTCTTCTTGCTTCCAAAACTGAGAACCTTTTAGTGTGAACGCTTGTCTCTTGGATTGTTTTGCCATCTGGAGACTGTGACCTTCAATCCTGTCTTTCCTTCTCTCCTTGAACACAG
Seq C2 exon
GTCCAGCAGCTGGACATGGAGGACGATCGCTCGTCACCACTGTCATTCTCCAGTGTCCCACACGAAGAGTCTGTGCGTCAGGCCCCTGCTCGACTCCCTAGAGAAACTGTGTTCCCTTCTTGCATTCTTCCTCCAAAAGAAGTTCCTCCTTTGTCTCCCACTGCCTCCCGGCAAGGTGTCTTGCCCCAGACTGACAGTACTACTAAGCAAGAGACATCCAGCCAGATGTCACATGTTCTTCAGAAAGGACCTTCACTCCTGTATCCTGCCACTTCTGAGCAAGACACACCTCACCAGGTATCCCTTGCTTCCCAGGAAGAAACCCAGTGCTCTCCTTCAGCAGCTGCTCAGGGGATCCCCTTCCTCTCGCACTCCGCCCACCGTCAGGAAGCTCCACTCCACTCTCCTGAGGTTCCTGAGAAAGACTCGCTGACTCTCTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTGCAAAAGGACACTCCCTTCCATACCTCTTCTGCCGCCCAGAAAGAACAGCCACTGCCCACTGCAGAGATCACTCGATTGGCTGTGTGGGCTGCTGTCCAAGCAGTGGAGAGGAAACTGGAGGCCCAGGCCATGCGACTACTGACTCTGGAGGGCAGGACAGGGACAAATGAGAAGAAGATAGCAGACTGTGAGAGAACGGCTGTGGAGTTCGCAAATCATCTGGAGAGCAAGTGGGTTGTACTGGGGACCTTACTGCAGGAGTATGGGCTGCTGCAGCGGCGCCTGGAGAACATGGAGAATCTGCTGAAAAACAGAAACTTCTGGATCCTGCGGCTGCCCCCAGGCAGCAATGGAGAAGTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477:ENSMUST00000095944:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.669
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF124173=DUF3669=WD(100=28.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types