HsaINT0188363 @ hg19
Intron Retention
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:26479]
Coordinates
chr16:89284111-89287560:+
Coord C1 exon
chr16:89284111-89284318
Coord A exon
chr16:89284319-89287404
Coord C2 exon
chr16:89287405-89287560
Length
3086 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTCTTCATCATGATTGCTAGGAA
3' ss Score
4.5
Exon sequences
Seq C1 exon
CTGTCTTACAGCTGATCCGGTTCTTGCGGCGGTGCGTGCTGGCGCCGGAGAGTTCCGCGCGTGTCCTCGGGCTGTCCGCGGGGAAGCTGGTCCGGGAGTGGGCGCCCGCCCGCCTGCCTCGCGCCTTGCGCCCCCGGCACCGCTTCCAGAAGGGAAAGTCGCCGCCGCTCGCGGTAGACCCGGGCAGCGCTTCCATTCCGCGGAGCTG
Seq A exon
GTGAGAGAGGGGCCCTTTGCTTCCTTCACTTTGAACAGGGCGTGTTTCTGTGAGAATCTGGCTTCGGCTTTGACGTTTTTTATTTGTTTCTGGCACATTGTGTTGGGACCGAAGCGTAAGGTAGACCCCTGAGCGCCCCGGGCGTGCAGCTCCCTGTGAAAGTTAGCCCGTGGGGGCCAGCGGGAGCGCGCGTCCCTCGCCGCCGGGACTTCCAGGCCCGGCCCTCGGGGCGGGAGGGATGCGGCCGTTGTCCCGCTGGTCTTGGAGTAATCGAATCCACGGTGAACAGTGTGTTTCGACTAACTGTATTTTTTCTCACGTTTTGCTTTAGAAAATCTGAATCTAATAAAAATGTGAACATCTGCTACAAGGAATATCCACTGCAATCGTTTTACTCCTTTTTAGCTTTGGGCCATGTTTTCTCTCTCCCCCAATAAATAAACCTTACGGTGAATTATTATTTGAGTGTAAGTAAGTTGAAATTAAACTGCACACATGATACTTAACCTTTAAATACTTGGTAAAGCGTCTGTTAAGGGTAAGGACATTATCCTACTGAAACCACAATATTAGTATTTCATCTAAGAAAATTAAAATTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGACCGACACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCTCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAATAATAATAATTAAAAATAATAAGGTCCGCTGGGCACAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGTGGATCATCTGAGGTCGGGAGTTCAAGACCAGCCTGACTAACATGGAGAAATCCCGTCTCTACTAAAAGTACAAAATTAGCCTTGCATGGTGGCGCATGCCTGTAATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGTGGCACAGGTTGCGGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAATAAAAAAATAAAAAAATAAGAAGGAGGTCATCCACTGTCTACTTTGTGTAATATCTAGGATTCTCAACATTTTTCCAACATTGCGCTGTTGGGTATTTTGGGGACTAAGAGCCCTTCAAGGTTTATCTGTTCCCATCGTTTATGTCTTTTCACCTAGAACAACCCCTGTGGTTTCTCTATCATATTGACTTTGGTGTTGTTTTCTCGTGATACGTTTAAATATTCCTCCATTTCTTGCTGCTTCCTATGAACTTGTAATTGAATTCAGAGGAGAGGTTGGCAAAGGGCGGATAGTAAGCACCTTCTGCCTTTGGGTCCACGAGGTCTCAGATGGCTGAGTTCAGCCTTAGTCACCTCATGTCCCATGTTAGCTGTTCCTTCTCTACTCTGTCCTGGTTCCAAGCCCCAGCCTATTTCTGAAAAGGTAAGTGGTCAGCTGCATAGATGACCGTTTAGAGGGTGTAGATTTACTCTGAAATCCCAGAGGGTTGTGCTCTGAGTCTTATCAGTGCTTGCCAGAGGCATCCAGCGGCATCCTGTTTACCATGGACGCTGTGTCAGTGGGTCTGCTGGGTCCTTTCCACCAAGTGCCTAAGAAGCTTGTCCTGCACCCTGAATGTGCACTGATCCACACTTGGCACTGGCAGCCTTACAGGCAACTGTGTAGAGCGTTAACGCTGTTATATACGTTGCCCCTAAAATTAAAAGATCTGCAGAGTGTTGTGCCTCTTTTTTGGTTATAGGTGTCATGAGGTGCAGTAACTTGGAGGTGCATATCGGAGGGGATGTCTTTATGTAATCCAGACTGCTGAACTCGTAGAAACTATGGCCCCTGAATCACAAGCTCTCTGTTGTGTATATTTCATATGAAGTTATCTAAAATGTGTTCATTTTCTGTTCACTGTATCCAACCAGCCTCATGTCAACATAGTGTATGAGTGCAGTCTGAGGGTCAGGTCCTCTGGGGATGATGTTAAGGTGGAGAACTGAATATTACATCCCTTTTTGAAGGAGGGAAAAGAGCCTGTGCAGGTGACAACAAAGTCAACACATTTGTGGGTCTTTTAGCCCAAAGACCTCGCCCCCGCCGACACCTAGTAGTAAGTACAGTTTATACAAGGAGAATGGACATGTTTTTCTGACATGTGAAACTTTACTGTTTTAGTCACCTCATCGGTAGAATAAGAAAGTACAGCTCTAGACCTACCTTTGTCCTGCTGGGGAGTGACCGCAGACTCAGGAGTACAAACTGACGAGACCGGGGCGGGGCACGGTGGCTCACGCCTGTAATCTCAACACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCCCACCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGGTGGCACTCGCCTGTAGTCTCAGCTACTTGGTAGGCTGAGGTGGAAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTACACTCCAGCCTGGGTGACAGCAAGACTCCATCTCAAAAGCAAACAAAACCTGTGACGAGATGGTCGAACATGTACCAGCTAACCGTCCTGGTTCACCACTTCCTAAGTGGATGATGTGGACCAGTTCATGTTATCTGAATCCAGGCTGTTTTAGGTATGAACACGGGTGAAATCTGTGAATGGCTGTTCTGATAATTAAAGGCTTCTGTTGTGTCTTTTGACCCATATACTGCTCTTCAGTAGGTGACGTGGATATTACTAGTCCTCAAGAGAGTAAAGTGGATATAGTGGCTTTCACATATATCATCTGCAGAAACAAGCTAATGCGTGAGGTTTGATAACTGGGAAGTAATGCTTCTTCATCATGATTGCTAG
Seq C2 exon
GAAATAGGGATCCAGCCATCCGTGGGTCAGGAGGAATGGAGACTGTACCTTCCACATAGATTCACAAGCTGCCCTGCAGTGGCCTTGGCTTCAGGAAAGGAGCATTCAGACGCTTCCGTCAGCCTCCCAGGATGGCAGCCCCTGACCTGGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100-ZNF778:NM_182531:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.222
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)