HsaINT0188363 @ hg38
Intron Retention
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:HGNC:26479]
Coordinates
chr16:89217710-89221152:+
Coord C1 exon
chr16:89217710-89217910
Coord A exon
chr16:89217911-89220996
Coord C2 exon
chr16:89220997-89221152
Length
3086 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTCTTCATCATGATTGCTAGGAA
3' ss Score
4.5
Exon sequences
Seq C1 exon
ACAGCTGATCCGGTTCTTGCGGCGGTGCGTGCTGGCGCCGGAGAGTTCCGCGCGTGTCCTCGGGCTGTCCGCGGGGAAGCTGGTCCGGGAGTGGGCGCCCGCCCGCCTGCCTCGCGCCTTGCGCCCCCGGCACCGCTTCCAGAAGGGAAAGTCGCCGCCGCTCGCGGTAGACCCGGGCAGCGCTTCCATTCCGCGGAGCTG
Seq A exon
GTGAGAGAGGGGCCCTTTGCTTCCTTCACTTTGAACAGGGCGTGTTTCTGTGAGAATCTGGCTTCGGCTTTGACGTTTTTTATTTGTTTCTGGCACATTGTGTTGGGACCGAAGCGTAAGGTAGACCCCTGAGCGCCCCGGGCGTGCAGCTCCCTGTGAAAGTTAGCCCGTGGGGGCCAGCGGGAGCGCGCGTCCCTCGCCGCCGGGACTTCCAGGCCCGGCCCTCGGGGCGGGAGGGATGCGGCCGTTGTCCCGCTGGTCTTGGAGTAATCGAATCCACGGTGAACAGTGTGTTTCGACTAACTGTATTTTTTCTCACGTTTTGCTTTAGAAAATCTGAATCTAATAAAAATGTGAACATCTGCTACAAGGAATATCCACTGCAATCGTTTTACTCCTTTTTAGCTTTGGGCCATGTTTTCTCTCTCCCCCAATAAATAAACCTTACGGTGAATTATTATTTGAGTGTAAGTAAGTTGAAATTAAACTGCACACATGATACTTAACCTTTAAATACTTGGTAAAGCGTCTGTTAAGGGTAAGGACATTATCCTACTGAAACCACAATATTAGTATTTCATCTAAGAAAATTAAAATTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGACCGACACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCTCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAATAATAATAATTAAAAATAATAAGGTCCGCTGGGCACAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGTGGATCATCTGAGGTCGGGAGTTCAAGACCAGCCTGACTAACATGGAGAAATCCCGTCTCTACTAAAAGTACAAAATTAGCCTTGCATGGTGGCGCATGCCTGTAATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGTGGCACAGGTTGCGGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAATAAAAAAATAAAAAAATAAGAAGGAGGTCATCCACTGTCTACTTTGTGTAATATCTAGGATTCTCAACATTTTTCCAACATTGCGCTGTTGGGTATTTTGGGGACTAAGAGCCCTTCAAGGTTTATCTGTTCCCATCGTTTATGTCTTTTCACCTAGAACAACCCCTGTGGTTTCTCTATCATATTGACTTTGGTGTTGTTTTCTCGTGATACGTTTAAATATTCCTCCATTTCTTGCTGCTTCCTATGAACTTGTAATTGAATTCAGAGGAGAGGTTGGCAAAGGGCGGATAGTAAGCACCTTATGCCTTTGGGTCCACGAGGTCTCAGATGGCTGAGTTCAGCCTTAGTCACCTCATGTCCCATGTTAGCTGTTCCTTCTCTACTCTGTCCTGGTTCCAAGCCCCAGCCTATTTCTGAAAAGGTAAGTGGTCAGCTGCATAGATGACCGTTTAGAGGGTGTAGATTTACTCTGAAATCCCAGAGGGTTGTGCTCTGAGTCTTATCAGTGCTTGCCAGAGGCATCCAGCGGCATCCTGTTTACCATGGACGCTGTGTCAGTGGGTCTGCTGGGTCCTTTCCACCAAGTGCCTAAGAAGCTTGTCCTGCACCCTGAATGTGCACTGATCCACACTTGGCACTGGCAGCCTTACAGGCAACTGTGTAGAGCGTTAACGCTGTTATATACGTTGCCCCTAAAATTAAAAGATCTGCAGAGTGTTGTGCCTCTTTTTTGGTTATAGGTGTCATGAGGTGCAGTAACTTGGAGGTGCATATCGGAGGGGATGTCTTTATGTAATCCAGACTGCTGAACTCGTAGAAACTATGGCCCCTGAATCACAAGCTCTCTGTTGTGTATATTTCATATGAAGTTATCTAAAATGTGTTCATTTTCTGTTCACTGTATCCAACCAGCCTCATGTCAACATAGTGTATGAGTGCAGTCTGAGGGTCAGGTCCTCTGGGGATGATGTTAAGGTGGAGAACTGAATATTACATCCCTTTTTGAAGGAGGGAAAAGAGCCTGTGCAGGTGACAACAAAGTCAACACATTTGTGGGTCTTTTAGCCCAAAGACCTCGCCCCCGCCGACACCTAGTAGTAAGTACAGTTTATACAAGGAGAATGGACATGTTTTTCTGACATGTGAAACTTTACTGTTTTAGTCACCTCATCGGTAGAATAAGAAAGTACAGCTCTAGACCTACCTTTGTCCTGCTGGGGAGTGACCGCAGACTCAGGAGTACAAACTGACGAGACCGGGGCGGGGCACGGTGGCTCACGCCTGTAATCTCAACACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCCCACCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGGTGGCACTCGCCTGTAGTCTCAGCTACTTGGTAGGCTGAGGTGGAAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTACACTCCAGCCTGGGTGACAGCAAGACTCCATCTCAAAAGCAAACAAAACCTGTGACGAGATGGTCGAACATGTACCAGCTAACCGTCCTGGTTCACCACTTCCTAAGTGGATGATGTGGACCAGTTCATGTTATCTGAATCCAGGCTGTTTTAGGTATGAACACGGGTGAAATCTGTGAATGGCTGTTCTGATAATTAAAGGCTTCTGTTGTGTCTTTTGACCCATATACTGCTCTTCAGTAGGTGACGTGGATATTACTAGTCCTCAAGAGAGTAAAGTGGATATAGTGGCTTTCACATATATCATCTGCAGAAACAAGCTAATGCGTGAGGTTTGATAACTGGGAAGTAATGCTTCTTCATCATGATTGCTAG
Seq C2 exon
GAAATAGGGATCCAGCCATCCGTGGGTCAGGAGGAATGGAGACTGTACCTTCCACATAGATTCACAAGCTGCCCTGCAGTGGCCTTGGCTTCAGGAAAGGAGCATTCAGACGCTTCCGTCAGCCTCCCAGGATGGCAGCCCCTGACCTGGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100:ENST00000620195:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.083
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains