HsaINT0188381 @ hg19
Intron Retention
Gene
ENSG00000196381 | ZNF781
Description
zinc finger protein 781 [Source:HGNC Symbol;Acc:26745]
Coordinates
chr19:38182422-38183216:-
Coord C1 exon
chr19:38183053-38183216
Coord A exon
chr19:38182520-38183052
Coord C2 exon
chr19:38182422-38182519
Length
533 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCATTTATTCTGTTGTTTAGGGA
3' ss Score
7.17
Exon sequences
Seq C1 exon
ACAAACGCGGCGGAACCGGTTGCGGGGAGGTTGCTTGAATTCTCTCAGCTGCGCCCCCTGACCTAGTAGTCGCTGGCACAAGCTGCGCCCGGAGACGTGGGAGCGTTCTCTTGTTTTCCGAGTGCGCGGACTCATCGGGTCACAGTTTATGCTTTTATGACGCG
Seq A exon
GTGAGTCCAGCCACTGATTCCTAACGGTTTAGAGTGGGGAGGTTACGCTTGGGCGTCCTGGACGCTGGCCCAAGTGGTGGCTGTAGAAGACGCACGGATCCCGGGATGGGGCTGGAGGTTTGCAAGAGTCCATCCGAGGGGATTCTGGCTGCGAGTGTGACAGAGTATATGAAAGCCGCATGGAGGATCTGATTGTAGTGTGAGCGAGAGTGAGTGCCCGCGAGGGATCGTCACCTGAATGAAAGTCTCGGATTCACCGCCTCTTATCTTCCCTTCTTCGACTGTAAAATGGTGAAAATAAGGGTGCTTCTTCCAGGACGTCAGTTTACTCGAAAATTTGGAAAAGGCTAAATAATTGATCTGATAAATACTATAAAACAGGATTTCTGTGTAAAAGATAAATTTATTATTGTATAGAATACCAAATCAGTGTGACTTTTAAATACAAGAAGAAATATTTTAAAGGAACTTATTTTGTGGGACTCCTGCTTTTGTGTCAGACCCTCAGAGTAGGCATTTATTCTGTTGTTTAG
Seq C2 exon
GGAACACAACAGATTTGAGAAGCCTCGGATTAAGGAATAATTTATGAAGCTCCGTTGACTACCGTGGAGAGATCATAATTTGGGGTTCAAGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196381-ZNF781:NM_152605:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAGGTTGCTTGAATTCT
R:
TGGAATCTTGAACCCCAAATTATGA
Band lengths:
239-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)