HsaINT0188381 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:37691521-37692322:-
Coord C1 exon
chr19:37692152-37692322
Coord A exon
chr19:37691619-37692151
Coord C2 exon
chr19:37691521-37691618
Length
533 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCATTTATTCTGTTGTTTAGGGA
3' ss Score
7.17
Exon sequences
Seq C1 exon
CCAGCCCACAAACGCGGCGGAACCGGTTGCGGGGAGGTTGCTTGAATTCTCTCAGCTGCGCCCCCTGACCTAGTAGTCGCTGGCACAAGCTGCGCCCGGAGACGTGGGAGCGTTCTCTTGTTTTCCGAGTGCGCGGACTCATCGGGTCACAGTTTATGCTTTTATGACGCG
Seq A exon
GTGAGTCCAGCCACTGATTCCTAACGGTTTAGAGTGGGGAGGTTACGCTTGGGCGTCCTGGACGCTGGCCCAAGTGGTGGCTGTAGAAGACGCACGGATCCCGGGATGGGGCTGGAGGTTTGCAAGAGTCCATCCGAGGGGATTCTGGCTGCGAGTGTGACAGAGTATATGAAAGCCGCATGGAGGATCTGATTGTAGTGTGAGCGAGAGTGAGTGCCCGCGAGGGATCGTCACCTGAATGAAAGTCTCGGATTCACCGCCTCTTATCTTCCCTTCTTCGACTGTAAAATGGTGAAAATAAGGGTGCTTCTTCCAGGACGTCAGTTTACTCGAAAATTTGGAAAAGGCTAAATAATTGATCTGATAAATACTATAAAACAGGATTTCTGTGTAAAAGATAAATTTATTATTGTATAGAATACCAAATCAGTGTGACTTTTAAATACAAGAAGAAATATTTTAAAGGAACTTATTTTGTGGGACTCCTGCTTTTGTGTCAGACCCTCAGAGTAGGCATTTATTCTGTTGTTTAG
Seq C2 exon
GGAACACAACAGATTTGAGAAGCCTCGGATTAAGGAATAATTTATGAAGCTCCGTTGACTACCGTGGAGAGATCATAATTTGGGGTTCAAGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196381:ENST00000358582:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAACGCGGCGGAACC
R:
TGGAATCTTGAACCCCAAATTATGA
Band lengths:
262-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains