HsaINT0188429 @ hg19
Intron Retention
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:33115]
Coordinates
chr19:38024210-38034239:+
Coord C1 exon
chr19:38024210-38024305
Coord A exon
chr19:38024306-38027798
Coord C2 exon
chr19:38027799-38034239
Length
3493 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
ATTCACTGTACTTTCTCCAGAAG
3' ss Score
6.56
Exon sequences
Seq C1 exon
GTTATGAAGGCACCAAACCAGATGTGATCCTCAGACTGGAGCAGGAAGAAGCACCATGGATTGGTGAGGCAGCATGCCCGGGCTGCCACTGTTGGG
Seq A exon
GTAAGTGTGATAAATCTAGCAAAAGGGGTACTGAAGGAGGCTGGCACCTTTGGAATTTTGTTCAGCATTCTTCTCTTAAAAGCCTTGAAAGTCCTCCGAGAGCTTCAGCCACGTTAATGACTCTTCAACCTCCATGCAACCCCACCGCCCATATCTGAGTGTTTTTCTCGGCTCTACTTGATTGCACCTCTGCCCTTATGTGCTTGGTCCATCTCTCTTTCTCCAGAATCTTTCCCATGCAGGTATTCTTACAAATAAAAGCTTCTATGATTCTCCTGTTCCTGCTTCCTATTCTCTGTTGTGACAAACTTTCCAGATAAAATGCTTCAGAGCTACCTGCTTTCCCTAATTTCTGCACTCAAATTTAAATCACTCCCATAGACAGATGACTGTGGGATCAGAGAAGAGGAAGCAGTGAATTCCATGTTGGGGTGGGGAGGTGTGAAGGAAATGGCTGAGCTGGGCCCATCTTAACCACTGCTGATTAACCCTCAGACTCACTGCCCCTCTCCCTTCAGCTCTGTAAGACATTCCAGCAATATCCATTGTACCCTGAGGGCTGATGGATGGCCCACTCTTAGGGATGCCTCTGAACTTCTGCTTCTGGCGCTCTCTGGAGTGTGTTCCTCCATTAAACTGTGCTCTTCAGCTGTCCTGAGACTGTGGTATCCCGGTTATCAGTTGCCCTCCTCTTCTTTTCTTCTCCTCTTCTGAAAATTTCGTAACTGCAAATTCCACAAGAATGTATCTAGTCAGCCTCCCGTTTTTCCAGCTACTCTGTTACTATCTATTTCCCTGGCTCAAACCCAGCATTTTCCTTCCAAGGAACAATTGCATTTTCTGTTTTCCATAACTTGGTTCTCTTTCCAGTGGTGTAATCCTCTCAAAGAACTCACCCATTCTGAGAGTACATGATTCTCACAACCAGCCCTTTTGCCATGTTGGGCCCTTTTTTCCCCCTTGCACTGCCCACCCCCGCATTTAACCAGTCTGTGGATTACACTACAGGTGTGCACTTACCCTGTTCTTTGTGTGTCAAAAACTAAAATCATCTTTATTTGTCCTTGCTACCCCTGCCACACACACACTCACACTCACACACACACACACACACGCACACACACACACCACTTCATCTTGCTTATTATTCCAGGGCTTTGCTACCGTGTGGTCATTTTGAATCTTCTGCCTTTACCACTCACTCTAACTGTTCCATTCATATGTGTGGTTTTGTTGATTTTTTTTCTTCTGAGAAATGGCTTTAAATCTTCCTCTCTGCTTTTTTTTTTTCTTTTTGAGACAGTGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCATGGCTCACTGCAGCCTTGACCTCCTGGGCTCAAGCGATCCTCCCACCTCTTAACCTCCCGAGTAACTGGGATTATATTCACGTGCTACCACACCTGGCTAATTTTCATTTTTTTTGTAGAGAAGGGGTTTTGCAGTGCCGCTCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAGTCCACCTGCTTTGGCTTCCCAAAGTGCTGGATTTACTGGCATGAGCCACCATGCCCAGTCCTTCTCCACTTTTTTTTGTTGTTATTGTTCAGATGAAGTCTTGTTCTGTCACCCAGGCTGGAATGCAGTGGTGCCATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTTAAGCAATTCTCTGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGCACGTGCCACCACCCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGATCTCCTGACCTCGTGATCCACCCGCCTTAGCCTCCCAAAGTGCTGGGATTACTGGCGTGAGCCACTGCACCCAGCCCCACTTTTAATTTTCCACTGATATCTCCTAAAATGAGACCCAGATTATCTCATGACTGAATGTCTTTAAGTGAGGGGTTATTAATTATTTTTGTGCCATGGACTTCTTAGGCATTCTTTTGAAGGCTATAGACCTCACTTCTATGTATAAAAATATAATAACGTTCATAAGATTATAAAATAAATGACTAAAGTACAGTAATTATCAAAATAAGCTAGAAAATAGTTATCAAAAAAAAATTTTTTTTTTTTTAGATGGAGTTTCACTCTGTCGCCCAGGCCGGAGTGCAATGGCATGATCTCAGCTCACTGCAGCCTCCTCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTGTGCCACCACGCCCAGCTTATTTTCTATTTTTAGTAGAGACTGGGTTTCATCATGTTGGTCAGGCTAGTCTTGAACTCCTGACGTCAGATGATCCACCTGCCTCGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCTTCAAAATATTTTCAAAATGTGCAATATAATAGTAGATGTACTTTTTCATTTATACGTTAATGAGGCCTAGCATCAGGTCTAATAACTGTCATGATCTCAAAGAAGAGATGATTATAAACATAATAATGTGACATGAAAATAACAATATTCACAAACTAGTATCAAGTCACAGGAACCACTAATACCACTGTGTTTTGTTGCTTATATTCATATTCAAAGGAAATGTTCAATTGTAGTTGGAACTCAGTGAAAACAAAAATGTAATTTCTTTTCTATCAAAGTTCACAAGCCCCCTGTTTTCTGCCAAGTTAAGAACTCTTGCTTAAGTCCTAGTTAGCTTTGTTGATTTTATTTTTTAATCTGTTTCACCTTAGAGTGCTTTACCGTTTATATTGTAACTAACTAGCCCAACATGATATTCCCTTGGATGACTGCTATACCAGTGCTTGTTAAGCTCCAAGGTGTTTGGAATCACCGGGGCATCTTGTTGAAATGCAGAGTCTGATTAAGTAGGTCTGGGGCGGTGCCTTAGATTCTGCACATCTAACAAGCTCCAAGTAAGGCCAAAATTGCCACTTGAAGACCCACATGCTGGATAGCAAGGTACTGTATAACATTTAACCTTCTTTCTTCTGTAACAGGGATCAGCAAACTGTGGCCTACCGATTGGCCACCTGCTTTGTGAATAAAGTTTTATTAGAACACAACCACATTCTTACGTTTACATGTTGTCTATATTTTCATGGTATGGCGGGAGAGTTGAGTCATTGTGACGGAGACCATATGGCCCACAAAGCCTTTACTTTCTGACTCCTTAAGAATAAGTTTGCCAACCTCTGCTCTGTAATATCCTATTTTCTTTGAAATTATTGGTCTCTATACTCTATGATATATTGAATTCCATTTGTGCCAGTGTTCAGAATCCTCTTTACTCATAGAACACTCTTCCCTGCGTTTGTGCTTTGGGTTATGGTTCATGTTCTCTATTTGTGTGCTGTGCACTCTTTAAATTTTGAGAGCATTTCTTAAGTAGTATGAAGTTTCATAAGGATGATTCACTGTACTTTCTCCAG
Seq C2 exon
AAGACATCTGGCGAGTTAATATCCAGAGGAAAAGACGGCAAGACATGCTTTTGAGGCCAGGCGCAGCCATAAGCAAGAAAACATTGCCCAAGGAGAAAAGCTGTGAATATAATAAGTTTGGGAAAATATCACTTCTGAGCACTGATCTTTTTTCTTCAATCCAGAGCCCTAGTAACTGGAACCCTTGTGGAAAGAATTTGAACCATAATTTAGACTTGATTGGTTTTAAGAGAAACTGTGCAAAAAAGCAAGATGAGTGTTATGCTTATGGGAAATTGCTTCAGCGTATAAATCATGGTAGACGACCTAATGGAGAAAAGCCCCGGGGTTGCAGTCACTGTGAGAAAGCTTTCACCCAGAACCCGGCACTTATGTATAAACCAGCAGTAAGTGATTCTCTCTTGTACAAACGGAAGAGGGTTCCACCTACAGAAAAACCCCACGTCTGTAGTGAGTGTGGGAAAGCCTTCTGCTACAAGTCTGAATTCATTAGGCATCAGAGAAGTCACACTGGGGAGAAGCCTTATGGCTGCACTGACTGTGGGAAAGCCTTTTCACATAAGTCAACCCTCATCAAACACCAGAGAATTCACACTGGGGTAAGACCCTTTGAATGTTTTTTTTGTGGGAAAGCCTTTACCCAGAAGTCACACCGCACAGAACATCAGAGAACACACACAGGAGAGAGACCCTTTGTCTGCAGTGAATGCGGGAAATCGTTTGGTGAGAAGTCATACCTCAATGTACATCGAAAAATGCACACAGGAGAAAGACCGTATCGTTGCAGAGAATGTGGAAAATCCTTCAGCCAGAAGTCATGCCTCAATAAACATTGGAGAACTCACACAGGAGAGAAGCCCTATGGGTGCAATGAATGTGGGAAAGCTTTCTACCAGAAGCCAAACCTCAGCAGACATCAGAAAATTCATGCTCGGAAGAATGCCTACAGGAATGAAAACTTAATAATTGTGGGAAATACTTGAGCAAAATATCTGGTTTCATGGTATGTAGGGAATTTTTTTTTTTTTTTTTTGAGTTGGAATCTCACTTTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTTACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCATGCCCGGCTAATTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCGCCTTGTCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCGGTATGTAGGGAATTTATCCTTAGGAGAAATCTTATCATTTTAATGAATTTGAACAGTGTGTTTTTATTTTATTTATTTATTTATTTTGAGTTGTATTCTCTGTTTCCCAGGCTGGAGTGCAATGGCACTATCTCGGCTCACTGTAACCTCAGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCTTTGGCTAGGCTGGTCTCGAACTCCTGACCTCGTGATACCCCCCAACCCCCCGCCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCAACGCGCCCAACCGACAGTGTTGTATCATAATGGAAATCATGATCTAATTGTGATACAAACTTTTCTAGAAAATACTTTCTCAAACATAAGCATGGACACCCTGGCATGTAAACGTTTAAAAATGTATTAAATGGAATAACAGCAGAATACAAAATATCTGTGAAGAGACTTAAAGGCATACTCTGGTATATTCCACAGTGAGCCATACAATCAGCATTATTTGTATTTTGGAGTTGTAAATGTGAAATTAACATAAAATGTGAATATCAGACACATGTCACACAACATATAGAATGCCATTCAGAAAACTTTTCCACTTTAAATATCATCATTGTCTTTTGATGTCTTAACAATACAAAAAAATAACAACAACATGGCCCACTATTGTTAAAAGAACTTTATTATACCAGCTACATTTTTCCACCTTTTTGTAATACATGTAAATGGCTATAGAGGTTGTTACTGTCCTCTGCAGAAATAATAAAGCAGTGTTTTTAAATGTATTTGGATAATTTGGCCAAAAATTTTACTAAAATGTAGTTATTTATATTAAAAATGCAAGCTAAGGAATAGTTTAAGAACCTGATACTGGGTAAATGAAACACTGTAAACTATTTGACAAAATGTAGTGTCACCCTGGTGTACAGTACACTGTTCATATTTTCTTAGTCTTGCTTAAAATATCTTGTAGCAAATTAGTAGCATTGCTACACTATTCTAGATACACTATTCTATATACAGGTTGTATAACTCAGAAATGTTTCATGCGTAGACCACTGAAGGAGAATTTCTTTTCTCTCTATCCCTCTGCAAATTAATTCAAGAATATTCATTTTTTTCATATAAATTTCCTTGCAAGTGTCCTAGACACTAAATCCCAAGGTTTTAATTATTTCAATGTTTGGAAAGAAGTCTGCTTCCCTGAGTTGCTATGTCATCCATATTAGAAAATAAATGGCCATGTGGAATCTACATTTTTCAAGATTTCCCTCCATGTAAGACTGCCTGATCCAGAATGAGAAAGGAGACATAACCACAGATATCAATATGATTTTTTAAGTGATAAAAAGATACCTCATACAACTCTAATCAACATATTTTTTAAAAAGAGGAGGTGGATGCTTTTCTAATAAACTTAAGTTATGAAAACTGCAATAAGAAGTAGAAAACTTGGTAGGATAGTTAACATTGAAAAACTCAAAAAAGCTATTAAAGATCTATAATGGGAAAATGCTCCAGGCTCAGAAGAGTTCATGCTTAGTTCTATCTTTTAAAGAAAGAGTAATACCAGTGTTATTTATTATATGGATGTAATACAATCCATGAACTGTACTCATTTATTTTATTAAGTCAGAATAAATTTTAACACCAAAATCAAATACAGATAGTTGAAAAAAGAAAACTTCTGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGAAGTTCGAGATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCACACACCTGTAGTCCCAGCTACTTGGGAGGTTGAGGCATGAGGCAGGAGAATTGCTTGTACCCAGGAGGTAGAGGTTGCGGTGAGCCAAGATCGTGCCATCCAGCCTGGGTGACAAGAGCGAAACTCCGTCAAAAAAAAAAAAAAAAAAAGAAAACTTCAGACCAGTCTTACTCATGAATATAGAAACAAAAATTATAGTTAAAATACTAGCAAATAGAATTCAGCCATATACCCAAAGAGTGACATAGTAAGAGTCATCCCAAGAATGCCAAACCAGTTCAGTTAATAGGAAATGCATCAATCAAATTAACAGTTTAAAGGAGAAGAATCATATGAACTCTCAACAGATACTGAGAAGGCATTTCATAGAATGTGTTAATTTACATTGTAATAGATGGGAACCACTTAAAGCGGTTTTTCTTAAAAAAAATTTTTTTTAACCCAAACCCCAAAGCATATATTATGCCAAAGCCATTTTTTAAAATCAGGAATTCAATATTGGCTTAGAGATTCCAGTGAAGGCAATAAAAAGAAATGAATTGGTATAAACAGCAGAAAAGGTAAAACTATCCATTTTTACTGATGATATGGTTGTACACCAATAAATGAAAAGACTATTTTTTGAGTTAACTTTTCTAAGAAGACAGGGTACCAAAATCAAGAGCTGTTCTCCATACTGACAAGAAAACATAATTTATATGTACTTCTTTTGGAATTACACTAAATCTCAATGATTTTTTGACAATCATTGAAAAAAATATATGAAAAAAATCATACCATGTATAAAAACATCACATGTACCCAATAAATATATACAACAATTATATATCTATAATAATTAAAAATTTTTAAAATGCCATGCTAGATACCAGAAGATAACATGAAGCCATTCTAATGAAATTAATATTGTATTGGCAAAGGAACAGGTAAATACATCATTAGAACACAGTAGAAAATTCAGAAATAGACTTCGATATATATGAACTTTTTCATATGTGAAAAAGGTGAAATCTGAAACCACAGGGGAAAAGAGTAGTTTACTTAAAAAGAATTCTGGAACAGAACCTTTTAATCTTAAAGGAAGAAAATTTGGATTAACAGCACAAAAATAAATTCTGGGTGGCTTTAAGACGTAAAATTTTAAAGCAACAGAATTCTTAAAAGAAAATCAAAGGAGCCTATGTGTACAATCTAGGAGTTGGGAGATATTAACTTTACCAACACAGGACACTCAGAAGCTATTTAGAAATAAGCAGTTGAAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGAGGATCACCTGAGGTTAGGAGTTCAAGACTAGTCTGGTCAACATGGTGAAACCCCATCTCCACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGAAGGCAGGGGTTGAAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAGAAAAAAAGAAAAAGAAAAAAAAAAGGAAACAAACATTTGACTACGTAGAATCTTTTGGTACAATCTTTTGGGTGACAAAAGATGCCATCAGCAAACTCAAGAGATAATAGATTGTGGGGAAATATTTGTAAAGCTGATCAGAGAGAAGGCATTCATGAAATGGACAGGAAAAAAACCCAATAGCAAAATGTGGCAAAGAATATGAGTTGACAGTTGTGAGAAGAGCAAATCTAAGTGGCCAATGGACCTGTCCAAAAATGTTTATCCTCAGTAGTCACTGGGGGATGCAGATTTAAAGTTAAAATCAAATAACACTGTGTAACAGCATTTTTAGCTATCAGAACAAAAGATGTTACACACTGCTGGTGGAGAAATAAATTTTGAAAAACAATGCAAATTACTGTTTTGGAAAGAAATCTGGTAATATTTAGGCTGGGCGTGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGCAAATTGTCTGAGGTCGGGAGTTCGAGAACAGCCTGGCCAGCATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGCACCTGTGATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAACCTGGGCAACAGAGCAAAAAGATTCCATCTCAAAAGAAAAGAAAAGAAATCTGTTAATATTATTAAAATATTTATGTCACTTTGGAGAATCTTCCCTTAGAAGTAAAAGCTCCAATACATAAAAGACAGATGAACATGTGAACATGGACATTTATTGTAAAAATTGTTCTTAATGGCAAAAAAACCCCCAAAACCAAAGCAAACACTAGAATCAAAGTAAATACCCATCAACTGGGAAATTGTAGAAAGGAAAAAACTATAGTGTATCCATTCCATAGAATGTTAATATAGCCATTAAGGTGGACAAATTAAAACTATGCTAGTGGACTTGAGTGGAATTCCACAATGTTCTCTTGAGTGAAAAATGCAAGGTAGATATTAAGTATGTTAAATATGACTCCATTTTTTTAAATCATTAACAAAATGTCTCTAGGTGTTTGTCAGCAATAAACGGTATCTATATATGTTTATTTGATTTTATGTGCATGAAGAAAAGTATAGAAGAGTATGCATTGACTTGGAGGGAGGTGGGTAATGCAGGTAGGTTATGGGGGAGTCAGGGGTGTAGGGAAAAGGAAAACCAAAAAAGAAAAATACATAAATGACTGAATCACGGGTGATACCACAAATGTGTGAGTTAGTAAATTTGGCTGGGGATGGGGGAGCTAGAATTTTGCTAATTTGTGGGGATGTTCATGGTATATATTGTAAAAAGGGAAAATTTCATAATAATGTATACGATTCTATTTTTAAAAAAAGTAAAAACTCCTGTGTGTGTATATATGCATGTGGATGTTTATATGAACATAGAAAAGTGTAGAAGAATACACACGAAGGTGTTAACATTCATTGGTTACCTTGGTGGAGAAGGGTAATAAGTTTTCTGAATACCTTTGCATTGTCTTGTTCACATATATTGCTTTTGTAATTTGAAAAACAAAATAAAGGGGGAAAACATTTCAAACTGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227-ZNF793:NM_001013659:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0136316=FYVE=WD(100=29.0),PF0214814=zf-UBP=WD(100=27.7),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF0013017=C1_1=WD(100=18.6),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)