MmuINT0178536 @ mm10
Intron Retention
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111666061-111671008:+
Coord C1 exon
chr8:111666061-111666204
Coord A exon
chr8:111666205-111669490
Coord C2 exon
chr8:111669491-111671008
Length
3286 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTCACTGTGCTTTGTCCTAGAAG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GAACTGTGTCATTTCAGGGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
Seq A exon
GTAAGGACAGCTTTGGGGATGATAGGAGTTGTAGACAGTGTAGTTAGAATGGTCAATTCAGAATTCTCCAAGGGAGCTACAGAAGGAAAATGGCAGATGTGATATCTGAGGCTTTGAACAGTTTGAGTACATTTGAGGTTTACAGGATTTTGTTTGTTTTTAAGGCAGGATCTCAATTATGTGGCCCTAGCTGGTCTTGAACTCAGAGATCATTAGCCTCTAACCCTCCTGCCCCAGTGCTGGGCAAAAGATGCACACTGTGGAAGGATTCATCTAGCCCAGCCTAGCTTTGAACTCTGTATGTAAGCCGAGTGTAGGGTTCCTGATCCTCCCAGTTGGACTCTCAAGCAATCACAGACATGCACTGCTATCCTGGTTTTATGTGGTGCTGGGATGGAGCCCAGGGCATTTTAGGTATGGTAGCTAAGCACTTTGCTAACAGAGCTACGTTTCCAGCCTCCTTTGGAACTATCTTTCTTTCTTTCTTTTTTTTTAAAGATTTATTTGTATGTATGTATGTACACTGTCACTGTCTTTGGACACACCAGAATGCGTAGGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATAGAACTCAGAGCCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCTGGAACTATTTTTCAATTCCAAAAACCTTTAGAGATGACTAAGAGCTCAGGATGGCTTGTAGTTTTGATCCCTGGCACACTTCCAAATACTCCTCTCTCCAGATTTATCAGTGCTTGCCTGACACATTAGTACTGGGAGTTTTAGTTATGTTCTCAATTTACCAGAATGATGACCTTGTATTTAACCCGTGGGAATGGGCACAGATTTTTCAATACAAAAATGAGATGGTTTTAGACAGCAGCAGGATCCTAAGGAGTAGCTAGTATACATCAGGGCTTTTAAAGGTCTAGACCAAGGCAGAGCACAAACTCTTAAATCTGCTCAGGTAAAGTAGGGCCACAGTAGAAAGATGAAAACGCAACCATGCTCAGCAGCCTTGATGTAAGAAAAGCTGTAAACCCAGCATATGATTGTGTCATAAGGACCCAGACTTTCCATTTTCAATACAGTGAACTCGGGGATCTTTATTGTTGGTATGTGAGACAGTCTCTCTACATAGTGTTGGCTGTCCTGGAACTCACTGTGTAGACCAGGCTAGCCTCAAACTCAGAGAGATCTGCCTGTGTCTCTTTCCCAAGTCCTGGAATTAAAGGTGTGTGCCACCCTGCCTAGCTAACTCAGAGATCTTGCTATCTACTTGAGAGGTGTCTCCAGAGACTTGAACACCACATGAGAAAAGGAAAGGTTTTGAGTTATTTGGGGGCTAGTGAGATGGCACAATGGATAAAGGGCCCTTGCCATAAAAAACATCATGACTTGAGTTGAACCCTAGAACCCATGGAAAAGTCAGAGAGACACCTGACTCTGTAGAGTCTTCTGATCTCTCCTCTCTCCCCATGTTTTGTTTCTTTTTGGAGACAGAGTCTGGCTGTGTATCCCTGACTGGCCTGGATTCACTGTGTAGACCGTGCTAGCCTCAAACTTGTAGAGATCCATGTGCCTGGATTAAAGTTGTGCTGAGATTACAGGTGTGGACCGTAATGCCTAACCGTTATTGTTTTAAGTTATTTTGATGTAAGAGGTGTGGTTCAGTTGGTAGAATGCTTGCCTAGCATACACGAAGTCCTAGACTGGATTGATTCCTTAGCAGACCCTGAATCAAAAAGATTTAAAAGTCAGAACTGGAGAGGTAGCTCCGTGGTTAAGTGTACTTACTGCAGCTGGGAAGTGGTGGCGTATGCTATCCTATATGCTGGGAAGTGGTGGCGTATGCCTTTAATCTCAGAGCTGGCAGATCTCTGTGAAGTTGAGGCTTCCATGGTCTACAGAGTGAGTTCCAGGACAGCCGAAGCTATAGAGAATCTGGAAGAAAAAGAAAAAAGAGTACTTACTTGCTGCTCTTCTAGAGGACCTGGGTTCAGTTTCCAGCACCCATATCGTGGTTCACAGCCACCTGCAACTTCAGTTCCTGGGAATCTGGGACCTTCTTCCTAGCCTCTGTGAGTTTTAGGCACACACACGGTGCACAGCCATACATATATACAAACGAAACACCCACATATATTGAAAAAAAAGTTAATTGGGGGCCAGTAGTTAAAACAAATGTCTGTAATAAAGAGTATAGCTGGGAATTTTAGGCCAGTCTGGTCTGCATACTGAAACCCAGTCTCAAAGGGGGAAGAATAATGGAGGTGCACAGAGAAGACTGACACCAGGGTCACTGTTAGATAGGATGAAGCGTCAGTCTCTATCCTCTGTTCCCCAGGCCTGGTCACTCAGTGTCGCCTACAGTGTTTTCTGGTCACTCAGTGTTGCCTACAGTGTTTCCTGGTCACTCAGTGTTGCCTACAGTGTTTCCTGGTCACTCAGTGTTGCCTACAGTGTTTCTTGGTTTCTAGGCTAGCTGTTTGTTGTCCTTGAGAGTACTGGGAAATCTTCATCCCTGAAACTGCTAGTTTTCTTTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATGTAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACCGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGCTAGTTTTCTTATGTCATCTTACACTTAAGTTTATTTTTGATTGTGACCACAGGGATGAAGAGACAGGATCTCTGTGTGTAGTCCAGACTGGGTTTAAACTCAGGCGTCCTGAGTGTTAGTTAGGATTACAGGCATGAGCTGGAAGCTTTCACCTTTGTTTGGGTTTTTTTATTTTGGGAGGGGGGTGTTTGTTGCCCAGTTTTTAGTTTCATTGGTTAGTTTTTTCCAGACAGGGTTTCACTATGAAGCCCTGACTGTTTTGGAACTTGATGTGAAGACCAAGCTGGCCTTGAACTCAGAGAGATCCGCCTGCCTCTGCCTCCTGAGTCCTGGGATTAAAGGTGTGCACCACCACTACCCAGCTTTTTTCTGCCCACTTTAAGGTCATTTTGTCCTCGGGAAACACACACAGCAGAGCTTAAGCGATGAAGACGGCTCGCAGTAGGGATTTTGTGGTGGGCACACTTGTGGGGATTTTCCACTCCAACAGAGAGCTTAAGAACCTTTCACTGTGCTTTGTCCTAG
Seq C2 exon
AAGTGTGGAAGGCTGATGGCCAGGTGGAGAGGGACCCCAGAGACCTGCAGAGGCAGGTGGGGTCACTTACAACCATCAAGAACCAACCACCAACTGAAGAAAGAGGCAGTCGTTTTGGAAAGACATTAACTCTGAACACAGACTTTGTTTCATTAAGACAAGTTCCCTATAAATATGATTTATATGAAAAAACTTTGAAGTACAATTCAGACTTACTTAGCAGTAGAAACTGTGTAAGAAAGAAAGGAGACGGGTGTGGTGGATTTGGGGAACCACTTCTGTACCTGAAGCAAGAGAAACCCCACGCTGGACTGGAATACTCAGAATATAATGGAAACGGAAGGGCTCTCAGCCATAAGGATGCCATCTTTAAACATCGGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAACTACTGTGACAAGACCTTCTCCTTCAAGTCGCTGCTCGTTAGCCACAAGCGGATCCACACGGGCGAGAAGCCCTATGAGTGTGATGTGTGCCAGAAAACCTTCTCCCATAAGGCCAACCTCATCAAACATCAGAGAATTCACACCGGAGAGAAGCCCTTTGAATGTCCCGAGTGTGGGAAGGCCTTTACCCACCAGTCAAACCTCATCGTTCACCAGAGAGCGCACATGGAGAAGAAGCCATATGGATGCAGCGAGTGTGGGAAGACATTCGCTCAGAAGTTTGAACTCACCACACACCAGAGGATTCACACAGGAGAGCGGCCCTACGAGTGTAACGAATGCGCAAAAACCTTCTTTAAGAAATCAAACCTCATCATACATCAGAAGATTCACACGGGGGAGAAACGCTACGAGTGCAGCGAGTGCGGGAAGTCCTTCATCCAGAACTCGCAGCTCATCATCCACAGGAGGACTCACACTGGGGAGAAGCCCTACGAGTGCACCGAGTGTGGCAAGACCTTCAGCCAGAGGTCAACGCTGAGGCTGCACCTGAGAATCCACACGGGAGAGAAACCCTACGAGTGTGCGGAGTGTGGGAAAGCCTTCAGCAGGAAGTCTCGCCTCAGCGTCCACCAGAGGGTTCACATGGCATAGTCCTGAGGCTCAGGCAGGCTGCTGCAGAAAACCTGTCAGGCCAGAATTCTTCAGTGAAGGGGGAAGCCCTCATGAAGATGCTGAAGGAACTTGGGAAATTCTATTGAGATGTAATCAATCTCAAAAAATTAAAAAAAAAAAAAGGATACCTAAGAATATTATACTGAGGGCTGGAGAGATGGCTCGGCGGTTAAGAGCACTTCCGGAGGTCCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCTATGCCACCTTCTGGTGTCTGAAGAGAGAGACAGTGTACTCATATAAAATAAATAATTTTTTAAAAAAAGATTATACTGAAAGTTATAATATCCAGCTAAAGAGTACATATCCAAATATATGTATGTATCTCAGTATGTGTATATCCAGATCAATTGTAAATAGACATACCCAGCTCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835:ENSMUST00000212072:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types