HsaINT0185472 @ hg19
Intron Retention
Gene
ENSG00000184517 | ZFP1
Description
zinc finger protein 1 homolog (mouse) [Source:HGNC Symbol;Acc:23328]
Coordinates
chr16:75200668-75206132:+
Coord C1 exon
chr16:75200668-75200794
Coord A exon
chr16:75200795-75203150
Coord C2 exon
chr16:75203151-75206132
Length
2356 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTGTGCTCTCTATTCCTAGAAG
3' ss Score
7.96
Exon sequences
Seq C1 exon
GGATCAGTTTCATTCACGGATGTGACTGTGGACTTTACCCAGGAGGAATGGGAACAACTGGACCCCTCTCAGAGGATCCTATACATGGATGTGATGCTGGAGAATTATAGCAACTTACTTTCAGTGG
Seq A exon
GTAAGGACGGTTTTCAGGTACAGCTCACCATGTGCCTAGAGGTATTTATGTCCTGTCTCAGTGACCAGAAATGAGCTTCTGAATTACTAAATGTTTTTGGCCTAAGTCCTCAGGTATTAAACCTGAGAGATCTTGCAGCCTTTAAAGCTCTATCATCTCCTTTCCTTTAAGGCTTCTGAAGTCCAGGCAATTAGGAGCTATGTCCCATTAGTAAATGGCTGTCAAGCCATATGCAATTTTCAAGTTGGAGCAACCAGAAGAGTTTTGGGTAGCATAGAGTTGTCAATTCAGAACATTCTAAGGGAGATAGGACGGGAGAGAGGGAGAAGCAGAAGCCAGTGGAATTAGTATCCAGACGATTATGAGCAGCTCAGTACCTTTGAAATACTTTTCAGCAATCTGTTTTTCAAATCCCTAACACTTAAGTATAGCTGAGGACAGATGACCTGTACCTCAATCTCTGAAGCATACCTCCAAATATCCGTCTCTCCCTGCTTACCTTTTTTTTTTTCCTGTTTAATCTTATAGATATTTGCCTCTCACACTTGAACCCTGAAACTTTCCTAACATATCTTAAACTTTGTTGTGTCTTGTACATGTACCATTCTTTTCCAGTCCACCATTAATGGGCACCTAGGTTGATTCCATGTCTTTGCTATTATGCATAGTGCTGTGATGAACCTATGAGTGGGCATGTGTCTTTTTGGTAGAATCTTTTTTTGAGACAGGGTCTCATTCTGTCACCCAGGCTAGAATCCAGTGGTGACATCACGGTGCACTGTAGCGTCCACCTCCTGAGCTCAAGTAGTCTTCCCACCTCAGCCTGGAGTAGCTGGGATCACAGACACACACCACCATGTCCTGCTAATTATTTTTTACTTTTGTAGAGACAAGTTCTCTGTAGAACTCCTGACCCCAGGCCAGGCGCCATGGCTCATGCTTATAATCCTAGCATTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGTTCAATACCAGCACCAACAACATGGTGAAAACCCCTCTCTACTAAAAATACAAAATAAGCCGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCGGGAGACGGAGGTTGCAGTGAGCTGAGATCACACCATTATACTCCAGCCTGGGCAACAGAGACCGACCCCATCTCAAAAAAACAAAAATAAGACCTCCTGACTTCAAGTGATCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAGTGTGCCTGGCCAGATGATTTTTAATGGGATTGCTATGTGAAAGGGTAGTTCTGAATTATTTGAGAAATCTTCAGACTGTTCTCCACAGTGGCTGAACTAATTTAAATTCCCACCAACAGTGTATCTTAGCCTTGCCAGTATCTGTTGTTTGACTTAATGAACCTGGGTAACTTTATCCTTAAGATGCTGAACACATTGAAAGAAGTAGGCTGGGCATGGTGGCTCATGCCTGGAATATTGAGAGTATCCCTTGAGCCCAGGAGGTCAAGGCTGCAGTGAGCTATGATTGTGCCACTGCACTCCAGCCTGGGCAAATGAGGGAGACCCTATCTCTAAATAGGAATGGAAGAAAAGTAGGATATGATAGTGAAAACATGTTCACTCTCCCAGCAACTTCAGTAGAAAAAAAAAAGCAATAAAACCAGCAGCAGTTAGTGATCCTGTGGTAAGGGTTGTGTATCTCTTAGCGAATGAGTTTCTGGATTTTACCATTTGCAAGATTCTCACTTAAGAGATTTGGAGCTCTGCTATCTGGTTGTCACTGCAAACCTATGAGAAGTGCTGTTCTCTGGAAATCATTTTGGTAAAGATGAACAGTAGAAAAAAAGGAGAAAAAGCTTAGAACTATGCAGACTGGTGCTGGTTCTACCATAGTAGTCCGAGTTTAGCAAATAATACTATTAGTCGAGATCTGCTTAGGTGTTTCCCCTTAATTCCCTCATCTGCTTACTTTCTCGGTCTCTGTGCTAACTGCAGTGTCCTTAAGAACACTGTGAATCTCCCTCCCTGGCATTGCCAGCCTTCTCATATTGTGTTCTGTTTTCTGTCTCCTTTCACCCTCTCTGCCCACTTTAAGGTCATTTTGTGATCTGGCAATGCTACTTGTATTGATTTTGGTTTTGTTTTGTTTTTTTAACCACAAGCTATTACCTTTCTCTTTCAAAGTTTGAAAGGAAACATTTGCACTGGGAATTTTTTAATATTGGGAGACTGGGTCCCAAACTAAAGAGTCAGCCCTGTGATAGAACACGTGTGAAGACTTCCCATTCGGTAACATTATAGCGGAGGCATTGACAAGGTTCTTTTCATTGTGCTCTCTATTCCTAG
Seq C2 exon
AAGTGTGGAAGGCTGATGACCAGATGGAGAGAGACCACAGAAACCCAGACGAGCAGGCGAGGCAATTTTTAATTCTTAAGAACCAAACCCCAATTGAGGAAAGAGGCGATCTCTTTGGAAAAGCACTTAATCTGAACACAGACTTTGTTTCTTTAAGACAAGTACCTTATAAATATGACTTATATGAAAAAACTTTGAAATATAATTCAGACTTGCTTAATAGTAATAGAAGCTATGCAGGAAAGCAGACTGATGAGTGTAATGAATTTGGAAAAGCACTTCTCTACCTGAAGCAAGAGAAAACCCACAGTGGAGTAGAATATTCTGAATACAATAAAAGTGGAAAAGCCCTCAGCCATAAAGCAGCCATTTTTAAACATCAGAAAATAAAAAACTTGGTTCAACCTTTCATTTGTACTTACTGTGACAAGGCTTTCTCCTTTAAGTCACTCCTCATTAGTCATAAGAGAATACATACTGGAGAAAAGCCATATGAATGCAATGTATGTAAGAAAACCTTCTCCCATAAGGCCAACCTCATCAAACATCAGAGAATTCACACTGGGGAGAAACCTTTCGAGTGTCCGGAATGTGGAAAAGCTTTCACCCACCAGTCAAACCTCATTGTACACCAGAGAGCACATATGGAGAAGAAGCCCTATGAGTGCAGTGAATGTGGAAAGACATTTGCCCAAAAGTTTGAACTCACCACACACCAGAGAATTCATACAGGAGAGCGACCCTATGAGTGTAACGAATGTGCAAAAACCTTCTTTAAGAAGTCAAACCTTATCATACATCAGAAGATTCACACGGGGGAGAAACGCTATGAGTGCAGTGAATGTGGAAAATCCTTTATCCAGAACTCACAGCTCATCATACACATGAGAACTCATACAGGAGAGAAACCCTATGAATGTACTGAGTGCGGCAAAACTTTCAGCCAGAGGTCAACTCTTAGATTACACTTGCGAATCCACACAGGAGAGAAACCATATGAGTGTTCCGAATGTGGGAAGGCCTTTAGCAGGAAGTCCCGACTCAGTGTCCATCAGAGAGTTCACATCGGGGAGAAACCCTGAAACTCCAGCCAGGTCTTACTGTGGAAAACTCCTGCCAGAACTCTTCAAGCGGGTGAAAAACCTCATGACAGTATTGAGGGAACATGGGAATTCATACTGAGATGCAATCTCTCAACTCAAAAATGTATTAAAAATAGGATCCCATGAGAACATTATACTGGAAGTTACATGTGATACCCAGCTAAAGAATACATATCAGAATATATCCAGTTGTAAATAGCCATACCCAGTTGTACTACAATGAGCTTTTTAAAATCTTGAATGAATTGAGTATTCTAGACAGCAGCATAAGAAATATACAAACAGTATCCTATGAATTTAGTGGTTTTATGTGGATATGCCACAAAACACAAGTGGTATGCTTTAGATCTGCACATGTGAATTTAGCATAATCACTGGGAATTTGAAATTCTTGTCCTCTGTGATAATTAGGACATAACAAGATTTTCCATACTAAACATCACATGTGTTTTTCAGTATCTCTGCAATCCAGTATGCATTCCAAATGAAATGTGTAACATTTAAAGTAGCATGGAACCTACGTCTTTCCCTACTGCTTGCTGGCATATATCAGTTGGTATGAACATTGTTCTTGAGCTGCCTCTTAGGAAACAGAAGACAGTGTTGAAGTTTTCCCTGCTTCTGGTTTGCTGAAGATTTTCTAGAAGCACTATTTACACAAATATGCAAATGTGAAATAACCGATCTATAACGTGAAGGAGGCAGACATGAGCTGTACTACTCAGTATGCACCACAGAATAAGAGTTTGCCGTGTAAAGACAATATCCCCATTCGTCATGCTCTTATTTTCCCGTGGGATATTTGCATACAAATGCATGTCTGTTACCAAAATATTGTGTAACACAGACAGAAACCACCTGTTTTTGTCTTTCCTTGTTTCCCTTAATATTTCATGAATTGTCTAGCAAAAATGGTAGGATGCTTCTGTAGTTCACAAATGTTACATTTCAGAGACTTTAGAGGAAAAATTATTTTAAATAACTGTCAACTGTTTCATTGCTTTTTAAATTTTTCACGTGCATAACCCCCTTTAGAAGTAAATTTTTACACTATTTTGTTGTTTAAAGGAGGCATTTCTACTTCCTTGAGTTTTGCTGTTGCCAACCTAAAACATTTCCCTTTGGAACATGAGTTATAAGTTATTACTTTTCCTTTACATGTTTACACTTTTATAAAAATCAGATTTTTCAGTGGTCTCTCCAGATATTAACAAGAATTGTTGTGTAACTCAAAGATTTGCTTTTATAGACTTGATTTCAAATTCTTAAGTTCAGCCTTTCCCTATCAATCACAAATCATGTATTGGAAATTATAAATGGCAACCAAAAACTGGCTTTTAAAAAATATTTTTGGATATCATTGATGTGCTGTCACACTATATATTGAGTGACTTTCTGAACAAATTTATCCAGAACATCCATAGCCCAATAAGCTTTTGTCTAAGTTGTCATCTTACTTACTCACAAAGGAGGGGAAAACGTTATTTTCATAGCTGCTTTTAGAAATGTAAATTGTAACAGCCTCCTTGGACAACATTGTGAGTCTGTTTTAACATTAATATACTCTTACAACCTAGGAATCTCCTGGGAATCTATCCCTAAGGAATAAAAAGCGCCAGCACTTAAGATTATATGTTTACTAATGTATATTGTATTTTTTGGTAAGGACCAAAAAAACAAACAAAAAAAAGACCATCAGTAAGGGAATGGATGAATAAATTGTGGTAAAAACATACCATGGCTGAATGGTATTTCCTTGAAAAGAATGTGTGGGAACAAACTCCAAACTTCTCTAGGTCAAATGAGGAAAGCAAGAGGGGAGAGAGAGAGTGTATGTGTGTGTGTAGCAGTTTTTATAAAATAAAGATAAACCCTTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517-ZFP1:NM_153688:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF127602=Zn_Tnp_IS1595=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)