BtaINT0164375 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000868 | ZFP1
Description
ZFP1 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23328]
Coordinates
chr18:2532232-2536014:+
Coord C1 exon
chr18:2532232-2532403
Coord A exon
chr18:2532404-2534941
Coord C2 exon
chr18:2534942-2536014
Length
2538 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCATGTGCTCTTTCCTAGAGG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CCAAATGCTAATCATATCAGAATAAATAGCAATATGCCATTTCAGGGATCAGTTTCATTCACCGATGTGACTGTGGACTTCACCCAGGAGGAATGGGAGCAACTGGACCCCTCTCAGAGGATCCTCTACATGGACGTGATGCTGGAGAATTACAGCAACTTACTGTCAGTGG
Seq A exon
GTAAGGACAGCTTTCGGGTGTAATTCAGCATTTGCCCGGTCGCGTTTAGGTCCTTTCTCAGCTACCCAAAATTACAAGCTTCTTGGTTTTGGTCTCAAGCTTCATGTATTAAAGCTGAGATAGTGCAGACTCTGAAGTTCTGCCTTCTTTATTTTCAGGCTTTTTCAAGTCCAAGCAGTTAGGAGCCATGTCCCATTATCAAGGTCTCTAATATTATCAAACCACATTTTCAGTAAGAATAGTTGTGGGTATCAGAGCTAGAATTTCCAGTTCAGAACTTTCTAGGGAGGGACTTCTCTGGTGCTCCAGTGGCTAAGACTGCACACTCCCCATGCAAGGGGCCTGGGTTCAGTCCCTGGTCAGGGGACTAGATCCCCCATGGCACCACTCAGACCCATCGTAAGCCAAATTCTTTTTTTTTTTTCCCCCCAAAAAAGAACATACTAGTATACAGAGTGAAGTAAGTCAGAAAGAAAAACACCAAAACAGGTATATTAACACATATATATGGAATTTAGAAAGATGGTAACAAAGACCCTATACGCGAGACAGCAAAAGAGACACTGATATAAAGAACAGACTTTTGGACTCTGTGGGAGAAGGCGAGGGTGGGATGATTTGAGAGAATAGTATTGAAACATGTATATTATCATATGTGAAACAGATCGCCAGTCCAGGTTTGATGCATGAGACAGGGTGCTCAGGGCTGGTGCACTGGGATGACCCAGAGGGATGGGATGGGGAGGGAGGTGGGAGGGGGGTTGAGGATGGGGAACACAGGTACACCCATGGCCGATTCATGTGAATGTATGGCAAAAACCACCACAATATTGTAAAGTAATTAGCCTCCAATTAAATAATTTAATTTAAAAAAAAAGAAAAAAGAAAATGATGAAGATAAAACCACCAGTTCGCTTTTTTTCTTCTTAAATATTTGCTAGTTTAGTTTTAGATAAAACAGTATTTGATCAATTAATGTTTAAAATGTTATTCTACTATGAGAACTTTGAGATGGTATTGTCATGGAAATAGGTGGCATAATCCAGAATTATTTTTTCCTTTCCTTCAAAAAATAAAACATCTGGGCATAGGTCTTGAGTGAACTGTAAGTACTGATATTTGTTTTTGAAAGATTTTCATACTTTTTTTCCAAGACTTAACCAGAAACGCTGTTTCTGTTATTAATCAAATGGTCTTAATAAACTATGCCAAGTCCAAAAAAAAAAAATACTAGGAAAAATGCGGAAGGTGGGAAGGAGAATCTGATAGAAGCCATTGGAAGTAATATCCTAGAGATTATGAATGGGTTGGTACCTTTGAAGTATTGTTTAGGAATCTGTTTTTCAAATCCCTAAACCTTTAGAGAAAGCTGAGGACAGATGACTTGTGCACCTCATATCTTGAGTCATACCTCCAAACATCAGTTTCTTCCTGCTTAGTTTTTTTCCTGTTTAATTTTTATATCTATTTGCCTCTCACAGTCAAGCCTTGATTCTTTCCTGGCATGTTATAAACCTTTGTTTCATGATTACTTTCTCTTTCATTAGTATTGTCATCTAGCCAGAATGGTGACTTCTGTATTTTAGGTCATGGGAATTGGTATACAGCCTCAAGGAAAATACACATTTCTCAGCACGAGTGCCACAAATGGCAGCAGGACCCAGTGATCAGGAATAACCAGTAATGCAGAGATGAAAGTAAAGGCTTGTACAGCATAGGGGGAGGTCGGGTAAATTTGATCCTTGAGATTCCTTGGAATAAAAGCTGGAACTTAGACTGGTTTGAGAAAGAAATGAAACACATTAAAGGAGAAAAATAAGATACAATGATAGAAACATTTTCTCTAACAGCTTCGATTGAAAAAAATAGTGCACCCAGCAGTAGCAGTGAGTGATTCTGCCAAAAGGATCTTGGATCCCTTTTGTATTTCCTACAGAATATATGAGTTTCTGGATTTTGCCTTCCACTTGCAAAAGTCTGACTTTGGAGATTTGGAGCTCCACGTAGGGTTCTGTCTGCAAATCTGTGAGAAATGTTCCCTTCAGGAAGTTACTGGTAAACCGGCTAGAGGAACAGAGGAGAGGAAAGGGGAAAGAGCCTTGAGTGTGTAGATGTGGTGGCCATCCGACCACAGTTAGAGTCTCAGCATTGGCTGCTCAACTTAGATCTGCCTGGTTTTTTCCCTCAACATCTACTTATTATCTTGTTCTGTGTCAGCTGGTGTCCTTGAGGACACCAAGTCGCATTTGTCTTTGGAATTGCCAGCCTTCCCACATCAGTTGTTTTTATTTCACTTTACCCACTTTTAAGGTCGTTTTGTAATCTGGGGTGTTTTCTGTGTCCATTTTGCCACAGGCTTTGTCTTTTTCTTTCATTGTTTAAGGGCTAGGAAAACTCGGAACTGGGGACTTTTTTATACTGAAAGACTGGGTCCCAAACTAAAGAAAGAGACAGCCCTGCAGTGGACCATTTGTGGAGCTTCACATTCTGTAACATTATGGTGAAAAGATTGACAGTATTTCATGTGCTCTTTCCTAG
Seq C2 exon
AGGTATGGAAGGCCGATGACCAGATGGAGACAGACCCCAGAAACCCAGATGAGCAGGCGAGGCCGTTTGTGATCTTTAAGGACCAGACACCAACCGAAGAAAGAGATAATAATCTCTTTGGAAAAACATTTAACCTTAGCACAGACTTTGTTTCTTTAAGACAAGTACCCTATAAATATGACTTATATGAAAAAACTTTGAGATATAATTCAGACTTACTTACTAGCAATAGAAACTATATAAGAAAGAAAGCAGATGACTGTAATGGATTTGGTAAAGCACTTTTCTATCTGAAACAAGAGAAAACCCATCCTGGAGTGGAATACTCGGAATATAATAAAAGTGGGAAAGCCTTCAGCCATAAAGAAGCCATTTTTAAACACCAGAAAATTAGAAATTTGGTGCAACCTTTTATCTGTAATTATTGTGACAAGGCTTTCTCGTTTAAATCACTCCTCATTAGTCATAAGAGAATACATACTGGAGAAAAGCCTTATGAATGTAATGTGTGTAAGAAAACCTTCTCCCATAAAGCAAACCTCATTAAACATCAGAGAATTCATACCGGGGAGAAACCCTTTGAATGTCTGGAATGTGGAAAAGCATTCACCCACCAGTCAAACCTCATTGTACACCAGAGAGCACACATGGAGAAGAAGCCCTATGAATGCAGCGAATGCGGCAAGACATTTGCCCAGAAATTTGAACTTACCACACACCAGAGAATTCATACTGGAGAACGACCCTATGAGTGTAATGAATGTGCAAAAACCTTCTTCAAGAAGTCAAATCTCATTATACACCAGAAAATTCACACGGGGGAGAAACGCTATGAGTGCAGTGAATGTGGAAAATCCTTCATCCAGAACTCACAGCTCATTATACACATGAGAACTCACACTGGAGAAAAGCCCTATGAATGCACTGAGTGTGGCAAAACTTTCAGCCAGAGGTCAACTCTTAGATTACATTTGCGAATCCACACGGGAGAGAAACCGTATGAGTGTGCTGAGTGTGGGAAAGCCTTCAGCAGGAAGTCCCGACTCAGTGTCCATCAGAGAGTTCACACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000868:ENSBTAT00000001155:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=70.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development