RnoINT0167711 @ rn6
Intron Retention
Gene
ENSRNOG00000019059 | Zfp1
Description
zinc finger protein 1 [Source:RGD Symbol;Acc:1565049]
Coordinates
chr19:43882249-43885837:+
Coord C1 exon
chr19:43882249-43882387
Coord A exon
chr19:43882388-43884767
Coord C2 exon
chr19:43884768-43885837
Length
2380 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTCATTGTGCTTTGTCCTAGAAG
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTGTCATTTCAGGGGTCCGTTTCATTCACTGATGTGACTGTGGACTTCTCCCAAGAGGAGTGGGAGCAGCTGGACCCCTCCCAGAGGATTCTCTACATGGATGTGATGTTGGAGAACTACAGCAACTTACTTTCAGTGG
Seq A exon
GTAAGGGCGGCTTTGGGAAATGGCTCTTTAAGCTGGAATGGTAGGACCTGTGGACAGTGTGGACAGTGTGGTCAGCGTGGTCAGTTCAGGATTGTTTAGGGAACTCCAAGGAGGAAAGTGAAAAGCTGGTAGATGTGATATCTGAGGTTTTGAGTACATTTGAGGTGTATGGTTTGTTTATCTTTAAGACAGGGTCTCACATGTGTGGCCCTAGTTGGTCTTGAACTCAGATCATTGGCCCCTAACCCTCTTGCCCCAGTGCTGGACAAAAGATGCATACTGTGAAAGGTTTTCTCTATCCCAGCCTGGCCTTGAACCCAGTATGTAAGTCAAGTATAGTTTCCGATTCTCTAAGTACTGCAATCACGGCCCGCACTACTATTCCTGGTTACATGGTGCCGGGATGGAGCCCAGGGCATTTTTAGGTATGGTAGGTAAGCACTGTGTAACAGAGCTACATTTCCAGCCTCCTTTAAAACTAATTTTCAATTCCAAAAACCTTTAGGATGACTAAGAACTCAGGGTGACCTGTACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCATGACCTGTACTTCTGATCCCTTGGACTTGTGTTTGGTTCCCATTTTCCATGTTGGAGGGCTCAGAGCCACCTGAACCATCAGCTCCAGGGGTTCTGAAATCTCTGACTCTGGTGGTACCTGTACTTACAGACATTAAAAAACAAACAAACAACAGCAACAACAACAACAAAAACCCTAGGGTTCATGTTGGTGGTGGGGGAGAACTGCAGGTGCTTCTCTCTGACTTCCTCACATGACAGGGCGTGCATGTGCACTCACACATAAGTAAAGAGTATAAGTTGCGTGTAGTGTTGTACACTCTAATCCCAGCACTGAGGCGGTAGAGGCAGGTAGATCTCTGTGAGTTCAAGGCCAGCTCAGTCTACATGGAGCGTTCCAGAACTGCCAAGGCTATCTCTAAAAAAGGGTGGTAGTGGGCTGCAGCTATAAGTCAGTGGTTAAGACTGCTGGCTATTCTTCCAGAGAACATGAGAATGATTCCTAGCATTTACACGAGGCTAACACTCTTCTGGAACTGCAGTTCCAGAAGATCTGGTGCCCTCTTCTGGTCTCTGTGGGCTCTGCACACAGACTCAGACTTAGCAAACAGATAAAACACCATACATGGGCTGGAGAGATGGCTCAGCGGTGGACTGACTGCTCTTCCAGAGGACCCGAGTTCAATTCCCAGTAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATGACCTCTTCTGGTGTGTCTGAAGACAGCTAGTGTGTACTCAAATAAATAAAAATAATAAAAAAAATATTAAAAAAAAAAACCATACATACACATAAGAGTAAATCAATCTTTTAAAAATTATTTTATGTATGGGTGTTTTGCCTGCCCATTCGTCTGTGTGCCGTGTGTGTACCTGGATACCGTCAGAAGCTAGAAGAGAGTGTTGGAATCCTCAGGAACTGGAGTGACAGGTGGTTTTAAGCCACCATGTAGGTGTGGGGATTGATCCCAGATCCTCTGAAGAACAGGCAGTTCTCTGAAGGTCTGAACTAGCTCTCCAGTTCTGTAATTTTTTGAAGTAAGTTATGTTCAGGGCTGGGGAGAGTATACAGGTGCCCACTGCAGCGTCCCAGGAATTCCACCTTTGGAAGGCCAGTAAGACCAAGCACATCAGTGAGCTCTGGGTTTGACTGAGAGACCCTGCCTCCTTGAGTAAGGCAGAAGAGCAGTAAAGAATGGTTGCTGGTGTGAGCCAGGAGCCTCCACCTGTATGTGTACCCACACCCACATACACGCAAACATGCGCACATACATACATCACACGTACGTGAACGTGAGAAAAGGAAAAGTTTCGAGTTATTTGGGGGCTGGTGAGGTAGCACGGTGGATAAAAGGCCTTTGCCATACAACCTTCATGACGAGTTGATGCTCAGAACCCATGGAAAAGTCAGAGACCTGACTCTGTGGGGTCCTCTAATATCTACTCCCTCCCCATATGCTCTCTTTTTGGAAACAGGGACTGGCCAGGACTCACCGAGCAGACCATGCTAGCCTCAGACTCGTAGAGATCCACCTGCCTGGATGAACACTGTGCTGGGATAAAAGGTGTGGGCCACTGTGCCTGCCCATTATTGTCATCAGTTGTTTTGATGTAAGAGGTGTAATTCAGTCGGTAGTCAGCTCTGTGGTGGGCGCACTTGTGGGGATTCCCACTCTAACAAAGAGAGAGATCAAGAGTCTTTCATTGTGCTTTGTCCTAG
Seq C2 exon
AAGTGTGGAAGGCTGATGACCAGGTGGAAAAGGACCCCAGAGAACCGGATAAGCAGGCACCATCACTTACAACCCCCAAGAACCAACCACCAACTGAAGAAAGAGGCAGTCTCTTTGGAAAGAGATTGAATCTGAACACAGACTTGGTTTCGTTACGACAAGTTCCCTATAAGTACTATTTATATGGGAAAACCTTGATGTACAATTCAGACCTGCTCAGCAGTAGGAGCTGTGTAGTAGAGAAAGGAGACGAGTGTGGTGGACTTGGGGAACCACTTCTGTACCTGAAACAAGAGAAGCCCCATGCTGGGCTTCAGTACTCAGAATATAACGGAAATGGAAGGTCTCTCAGCCATACGGACGCCATCTTTAAACATCAGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAATTACTGTGACAAGGCCTTCTCCTTCAAGTCCCTGCTTGTAAGTCACAAGAGGATCCACACGGGAGAAAAGCCCTACGAGTGCAATGTATGCCAAAAAACCTTCTCCCATAAGGCAAACCTCATCAAGCACCAGAGGATTCACACTGGAGAGAAACCCTTTGAGTGTCCCGAGTGCGGGAAAGCATTTACCCACCAGTCAAACCTCATCGTGCACCAGAGAGCACACATGGCGAAGAAGCCCTATGGATGCAATGAATGTGGAAAGACATTTGCTCAGAAGTTTGAGCTCACCACACACCAGAGAATTCACACAGGAGAGCGGCCCTATGAGTGTAACGAATGCGCAAAAACCTTCTTTAAGAAATCAAACCTCATCATACATCAGAAAATTCACACAGGGGAGAAACGCTACGAGTGCAGTGAGTGTGGGAAGTCGTTCATCCAGAACTCCCAGCTCATCATCCACAGGAGAACGCACACTGGGGAGAAGCCCTATGAGTGCACGGAGTGTGGCAAGACGTTCAGCCAGAGGTCAACGCTCAGGCTACACCTGAGAATCCATACGGGAGAGAAACCCTACGAGTGTGCAGAGTGTGGGAAAGCCTTCAGCAGGAAGTCTCGCCTCAGCGTCCACCAGAGGGTTCACATGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019059:ENSRNOT00000025761:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=87.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]