HsaINT1000134 @ hg38
Intron Retention
Gene
ENSG00000154258 | ABCA9
Description
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr17:69028535-69029227:-
Coord C1 exon
chr17:69029169-69029227
Coord A exon
chr17:69028646-69029168
Coord C2 exon
chr17:69028535-69028645
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTTTTTAAAATCATGCCAGGTG
3' ss Score
7.68
Exon sequences
Seq C1 exon
AATCAAAAATCTTAAAAAAGAATATGCAGGGAAGTGTGAGAGAGTAGAAGCTTTGAAAG
Seq A exon
GTAATAAAATAATATTTTATTTAATGGGGCTGCTTGATTTAGTGGCTGCCTTACTGTTGTAATTTCTTGGTAGGGATTAAGCACAGATATTCCAGATATGTCTCTCCTTTATTTGAACACATTATGTTTCCTTCAATGTAAAAAAAAAACCCATAAAACAATTTTTAAAAGTATCATTAAAATGTATCATTAAAAATCGTGTGGGTTTGAAAGATATATGATAGTATTATGAAATTCTTTGTTTCAGCTCATCTTATTCTCCAGCTCTAAAATTGTATTATTGTTAGCCTCTATTTATTGACAAAACTGCTTTTATCAAAAAAATTAATTGCATAATAACATATTGACAATACTATCACTACAAAATGTTGAAATACAGTTTTAAAAGAAAGAATTTTAAGATGAATTTTATTTTGAATATTGCTAGCTCAATCTATTCATGCTGCAAAAAATTACAACAGTTTCAGAGACTGTAAAGTTAATATGTAGGCTCTGAGTGTAATTTTTTTTAAAATCATGCCAG
Seq C2 exon
GTGTGGTGTTTGACATATATGAAGGCCAGATCACTGCCCTCCTTGGTCACAGTGGAGCTGGAAAAACTACCCTGTTAAACATACTTAGTGGGTTGTCAGTTCCAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154258:ENST00000340001:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(1.4=9.5)
A:
NA
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains