HsaINT1000913 @ hg38
Intron Retention
Gene
ENSG00000239467 | AC007405.6
Description
NA
Coordinates
chr2:170777147-170777425:+
Coord C1 exon
chr2:170777147-170777177
Coord A exon
chr2:170777178-170777376
Coord C2 exon
chr2:170777377-170777425
Length
199 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TATTTCTGCTTCTATTTTAGACA
3' ss Score
9.05
Exon sequences
Seq C1 exon
GACTTCTGTAGACAAGACAGATACTGTAAAG
Seq A exon
GTGAGAGTATATAATTTTTTTAGGATGTTTTGAGTCTATTTTAGCATCAATTTATACAGTTTTTAAATAACCAGCTTTAGTATAAAATTGTATCTTATTCTAGCTAGTAGAAATGTTTACATAAAGGCTATTAGTAAATTATTTCAAATATCTCAAACTAAAATAATAATGCTAGTTTTTATTTCTGCTTCTATTTTAG
Seq C2 exon
ACAGCAAAGAACAAACAGAATGGCAGATTGCTAATGTTTGATCCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239467:ENST00000426475:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains